Study Phenotyping Study: Morphometric internal EXTREME
Identification
Name
Morphometric internal EXTREME
Identifier
dXJuOklOUkFFLVVSR0kvc3R1ZHkvVE9NT19FWFQ=
Source
Data link
Project name
AKER
Seasons
2019-2020
Date
From 2019-11-13 to 2020-04-05
Location name
Genotype
| Accession number | Name | Taxon |
|---|---|---|
| B17Z10065 | B17Z10065 | Beta vulgaris subsp. vulgaris |
| B17Z10083 | B17Z10083 | Beta vulgaris subsp. vulgaris |
| B17Z10089 | B17Z10089 | Beta vulgaris subsp. vulgaris |
| B17Z10179 | B17Z10179 | Beta vulgaris subsp. vulgaris |
| B17Z10229 | B17Z10229 | Beta vulgaris subsp. vulgaris |
| B17Z10243 | B17Z10243 | Beta vulgaris subsp. vulgaris |
| B17Z10247 | B17Z10247 | Beta vulgaris subsp. vulgaris |
| B17Z10959 | B17Z10959 | Beta vulgaris subsp. vulgaris |
| B17Z11119 | B17Z11119 | Beta vulgaris subsp. vulgaris |
| B17Z11129 | B17Z11129 | Beta vulgaris subsp. vulgaris |
| B17Z11207 | B17Z11207 | Beta vulgaris subsp. vulgaris |
| B17Z11689 | B17Z11689 | Beta vulgaris subsp. vulgaris |
| B17Z13329 | B17Z13329 | Beta vulgaris subsp. vulgaris |
| B17Z13355 | B17Z13355 | Beta vulgaris subsp. vulgaris |
| B17Z13409 | B17Z13409 | Beta vulgaris subsp. vulgaris |
| B17Z13421 | B17Z13421 | Beta vulgaris subsp. vulgaris |
| B17Z13425 | B17Z13425 | Beta vulgaris subsp. vulgaris |
| B17Z13539 | B17Z13539 | Beta vulgaris subsp. vulgaris |
| B17Z13875 | B17Z13875 | Beta vulgaris subsp. vulgaris |
| B17Z13961 | B17Z13961 | Beta vulgaris subsp. vulgaris |
| B17Z13977 | B17Z13977 | Beta vulgaris subsp. vulgaris |
| B17Z14157 | B17Z14157 | Beta vulgaris subsp. vulgaris |
| B17Z14201 | B17Z14201 | Beta vulgaris subsp. vulgaris |
| B17Z14203 | B17Z14203 | Beta vulgaris subsp. vulgaris |
| B17Z14229 | B17Z14229 | Beta vulgaris subsp. vulgaris |
| B17Z14233 | B17Z14233 | Beta vulgaris subsp. vulgaris |
| B17Z14259 | B17Z14259 | Beta vulgaris subsp. vulgaris |
| B17Z14261 | B17Z14261 | Beta vulgaris subsp. vulgaris |
| B17Z14267 | B17Z14267 | Beta vulgaris subsp. vulgaris |
| B17Z14337 | B17Z14337 | Beta vulgaris subsp. vulgaris |
| B17Z14343 | B17Z14343 | Beta vulgaris subsp. vulgaris |
| B17Z14357 | B17Z14357 | Beta vulgaris subsp. vulgaris |
| B17Z14359 | B17Z14359 | Beta vulgaris subsp. vulgaris |
| B17Z14375 | B17Z14375 | Beta vulgaris subsp. vulgaris |
| B17Z14413 | B17Z14413 | Beta vulgaris subsp. vulgaris |
| B17Z14429 | B17Z14429 | Beta vulgaris subsp. vulgaris |
| B17Z14433 | B17Z14433 | Beta vulgaris subsp. vulgaris |
| B17Z14439 | B17Z14439 | Beta vulgaris subsp. vulgaris |
| B17Z14451 | B17Z14451 | Beta vulgaris subsp. vulgaris |
| B17Z14453 | B17Z14453 | Beta vulgaris subsp. vulgaris |
| B17Z14457 | B17Z14457 | Beta vulgaris subsp. vulgaris |
| B17Z14469 | B17Z14469 | Beta vulgaris subsp. vulgaris |
| B17Z14475 | B17Z14475 | Beta vulgaris subsp. vulgaris |
| B17Z14483 | B17Z14483 | Beta vulgaris subsp. vulgaris |
| B17Z14501 | B17Z14501 | Beta vulgaris subsp. vulgaris |
| B17Z14503 | B17Z14503 | Beta vulgaris subsp. vulgaris |
| B17Z14507 | B17Z14507 | Beta vulgaris subsp. vulgaris |
| B17Z14515 | B17Z14515 | Beta vulgaris subsp. vulgaris |
| B17Z14639 | B17Z14639 | Beta vulgaris subsp. vulgaris |
| B17Z14665 | B17Z14665 | Beta vulgaris subsp. vulgaris |
| B17Z14667 | B17Z14667 | Beta vulgaris subsp. vulgaris |
| B17Z14681 | B17Z14681 | Beta vulgaris subsp. vulgaris |
| B17Z14731 | B17Z14731 | Beta vulgaris subsp. vulgaris |
| B17Z14743 | B17Z14743 | Beta vulgaris subsp. vulgaris |
| B17Z14773 | B17Z14773 | Beta vulgaris subsp. vulgaris |
| B17Z14813 | B17Z14813 | Beta vulgaris subsp. vulgaris |
| B17Z14843 | B17Z14843 | Beta vulgaris subsp. vulgaris |
| B17Z14845 | B17Z14845 | Beta vulgaris subsp. vulgaris |
| B17Z14919 | B17Z14919 | Beta vulgaris subsp. vulgaris |
| B17Z14951 | B17Z14951 | Beta vulgaris subsp. vulgaris |
| B17Z14971 | B17Z14971 | Beta vulgaris subsp. vulgaris |
| B17Z14975 | B17Z14975 | Beta vulgaris subsp. vulgaris |
| B17Z14977 | B17Z14977 | Beta vulgaris subsp. vulgaris |
| B17Z15033 | B17Z15033 | Beta vulgaris subsp. vulgaris |
| B17Z15035 | B17Z15035 | Beta vulgaris subsp. vulgaris |
| B17Z15049 | B17Z15049 | Beta vulgaris subsp. vulgaris |
| B17Z15055 | B17Z15055 | Beta vulgaris subsp. vulgaris |
| B17Z15057 | B17Z15057 | Beta vulgaris subsp. vulgaris |
| B17Z15065 | B17Z15065 | Beta vulgaris subsp. vulgaris |
| B17Z15075 | B17Z15075 | Beta vulgaris subsp. vulgaris |
| B17Z15103 | B17Z15103 | Beta vulgaris subsp. vulgaris |
| B17Z15173 | B17Z15173 | Beta vulgaris subsp. vulgaris |
| B17Z15207 | B17Z15207 | Beta vulgaris subsp. vulgaris |
| B17Z15209 | B17Z15209 | Beta vulgaris subsp. vulgaris |
| B17Z15229 | B17Z15229 | Beta vulgaris subsp. vulgaris |
| B17Z15247 | B17Z15247 | Beta vulgaris subsp. vulgaris |
| B17Z15251 | B17Z15251 | Beta vulgaris subsp. vulgaris |
| B17Z15267 | B17Z15267 | Beta vulgaris subsp. vulgaris |
| B17Z15285 | B17Z15285 | Beta vulgaris subsp. vulgaris |
| B17Z15329 | B17Z15329 | Beta vulgaris subsp. vulgaris |
| B17Z15401 | B17Z15401 | Beta vulgaris subsp. vulgaris |
| B17Z15513 | B17Z15513 | Beta vulgaris subsp. vulgaris |
| B17Z15535 | B17Z15535 | Beta vulgaris subsp. vulgaris |
| B17Z15541 | B17Z15541 | Beta vulgaris subsp. vulgaris |
| B17Z15543 | B17Z15543 | Beta vulgaris subsp. vulgaris |
| B17Z15593 | B17Z15593 | Beta vulgaris subsp. vulgaris |
| B17Z15595 | B17Z15595 | Beta vulgaris subsp. vulgaris |
| B17Z15615 | B17Z15615 | Beta vulgaris subsp. vulgaris |
| B17Z16407 | B17Z16407 | Beta vulgaris subsp. vulgaris |
| B17Z16431 | B17Z16431 | Beta vulgaris subsp. vulgaris |
| B17Z16483 | B17Z16483 | Beta vulgaris subsp. vulgaris |
| B17Z16667 | B17Z16667 | Beta vulgaris subsp. vulgaris |
| B18Z10016 | B18Z10016 | Beta vulgaris subsp. vulgaris |
| B18Z10552 | B18Z10552 | Beta vulgaris subsp. vulgaris |
| B18Z10582 | B18Z10582 | Beta vulgaris subsp. vulgaris |
| B18Z10628 | B18Z10628 | Beta vulgaris subsp. vulgaris |
| B18Z10634 | B18Z10634 | Beta vulgaris subsp. vulgaris |
| B18Z10680 | B18Z10680 | Beta vulgaris subsp. vulgaris |
| STD1 | Commercial Standard_YG1 | Beta vulgaris subsp. vulgaris |
| STD2 | Commercial Standard_YG2 | Beta vulgaris subsp. vulgaris |
Variables
| Variable ID | Variable short name | Variable long name | Ontology name | Trait description |
|---|---|---|---|---|
| CO_333:1000317 | SeedCoatSurfArea | Seed Coat Surface Area | Beet Ontology | External surface area of the seed coat measured |
| CO_333:1000319 | EmbSurfArea | Embryo Surface Area | Beet Ontology | External surface area of the embryo measured |
| CO_333:1000320 | EmbVol | Embryo Volume | Beet Ontology | Volume of the embryo measured |
| CO_333:1000323 | PerispSurfArea | Perisperm Surface Area | Beet Ontology | External surface area of the perisperm measured |
| CO_333:1000324 | PerispVol | Perisperm Volume | Beet Ontology | Volume of the perisperm measured |
| CO_333:1000325 | SeedCoatVol | Seed Coat Volume | Beet Ontology | Volume of the seed coat measured |
| CO_333:1000389 | PerispShapeVA3d | Perisperm Shape VA3d | Beet Ontology | An index that equals to 1 in case that the perisperm equals to perfect a sphere |
| CO_333:1000390 | PerispSpDiameter | Perisperm SpDiameter mm | Beet Ontology | Diameter of the minimal sphere containing the perisperm |
| CO_333:1000391 | EmbShapeVA3d | Embryo Shape VA3d | Beet Ontology | An index that equals to 1 in case that the embryo equals to perfect a sphere |
| CO_333:1000392 | EmbSpDiameter | Embryo SpDiameter mm | Beet Ontology | Diameter of the minimal sphere containing the embryo |
| CO_333:1000393 | SeedCoatShapeVA3d | Seed Coat Shape VA3d | Beet Ontology | An index that equals to 1 in case that the seed coat equals to perfect a sphere |
| CO_333:1000394 | SeedCoatSpDiameter | Seed Coat SpDiameter mm | Beet Ontology | Diameter of the minimal sphere containing the seed coat |
| CO_333:1000395 | FillingRatio | Seed Filling Ratio | Beet Ontology | The ratio of the filled volume of the seed to the total volume of the seed |
| CO_333:1000400 | EmbSurfArea_STD | Standard Deviation Embryo Surface Area | Beet Ontology | Standard deviation of the external surface area of the embryo |
| CO_333:1000401 | PerispSurfArea_STD | Standard Deviation Perisperm Surface Area | Beet Ontology | Standard deviation of the external surface area of the perisperm |
| CO_333:1000402 | SeedCoatSurfArea_STD | Standard Deviation Seed Coat Surface Area | Beet Ontology | Standard deviation of the external surface area of the seed coat |
| CO_333:1000403 | EmbSpDiameter_STD | Standard Deviation Embryo SpDiameter mm | Beet Ontology | Standard deviation of the diameter of the minimal sphere containing the embryo |
| CO_333:1000404 | EmbShapeVA3d_STD | Standard Deviation Embryo Shape VA3d | Beet Ontology | Standard deviation of the shape factor of the embryo |
| CO_333:1000405 | PerispSpDiameter_STD | Standard Deviation Perisperm SpDiameter mm | Beet Ontology | Standard deviation of the diameter of the minimal sphere containing the perisperm |
| CO_333:1000406 | PerispShapeVA3d_STD | Standard Deviation Perisperm Shape VA3d | Beet Ontology | Standard deviation of the shape factor of the perisperm |
| CO_333:1000407 | SeedCoatSpDiameter_STD | Standard Deviation Seed Coat SpDiameter mm | Beet Ontology | Standard deviation of the diameter of the minimal sphere containing the seed coat |
| CO_333:1000408 | SeedCoatShapeVA3d_STD | Standard Deviation Seed Coat Shape VA3d | Beet Ontology | Standard deviation of the shape factor of the seed coat |
| CO_333:1000409 | EmbVol_STD | Standard Deviation Embryo Volume | Beet Ontology | Standard deviation of the volume of the embryo |
| CO_333:1000410 | PerispVol_STD | Standard Deviation Perisperm Volume | Beet Ontology | Standard deviation of the volume of the perisperm |
| CO_333:1000411 | SeedCoatVol_STD | Standard Deviation Seed Coat Volume | Beet Ontology | Standard deviation of the volume of the seed coat |
| CO_333:1000416 | SeedCoatFlatness | Seed Coat Flatness | Beet Ontology | Indicator of the flat surface of Seed Coat (the closer the value is to zero, the flatter the Seed Coat) |
| CO_333:1000417 | EmbFeretShape3d | Embryo Feret Shape 3d | Beet Ontology | The diameter of the embryo corresponds to the maximum extent in a given direction. It is used to quantify variations in embryo size as a function of direction. The minimum and maximum embryo diameter also makes it possible to characterize the shape of the embryo, or to obtain an oriented enclosing box. |
| CO_333:1000418 | EmbEqDiameter | Embryo Equivalent Diameter | Beet Ontology | The diameter of a sphere that has an equivalent volume in relation to the embryo |
| CO_333:1000419 | PeriEqDiameter | Perisperm Equivalent Diameter | Beet Ontology | The diameter of a sphere that has an equivalent volume in relation to the persiperm |
| CO_333:1000420 | SeedCoatEqDiameter | Seed Coat Equivalent Diameter | Beet Ontology | The diameter of a sphere that has an equivalent volume in relation to the seed coat |
| CO_333:1000421 | EmbLength3d | Embryo Lenght 3d | Beet Ontology | Embryo length measurements on the X-axis |
| CO_333:1000422 | PeriLength3d | Perisperm Lenght 3d | Beet Ontology | Perisperm length measurements on the X-axis |
| CO_333:1000423 | SeedCoatLength3d | Seed Coat lenght 3d | Beet Ontology | Seed Coat length measurements on the X-axis |
| CO_333:1000424 | EmbWidth3d | Embryo Width 3d | Beet Ontology | Embryo width measurements on the Y-axis |
| CO_333:1000425 | PeriWidth3d | Persiperm Width 3d | Beet Ontology | Perisperm width measurements on the Y-axis |
| CO_333:1000426 | SeedCoatWidth3d | Seed Coat Width 3d | Beet Ontology | Seed Coat width measurements on the Y-axis |
| CO_333:1000427 | SeedCoatMaxThickness | Seed Coat Maximum Thickness | Beet Ontology | The measure of the maximum thickness of the seed coat |
| CO_333:1000428 | EmbSphericity | Embryo Sphericity index | Beet Ontology | Surface characterization of the embryo |
| CO_333:1000429 | PeriSphericity | Perisperm Sphericity index | Beet Ontology | Surface characterization of the perisperm |
| CO_333:1000430 | SeedCoatRugosity | Seed Coat Rugosity index | Beet Ontology | Surface characterization of the seed coat |
| CO_333:1000431 | EmptyVolume | Empty Space Volume | Beet Ontology | The volume of the empty space in the seed |
| CO_333:1000432 | EmbEqDiameter_STD | Standard Deviation Embryo Equivalent Diameter | Beet Ontology | Standard deviation of the diameter of a sphere that has an equivalent volume in relation to the embryo |
| CO_333:1000433 | PeriEqDiameter_STD | Standard Deviation Perisperm Equivalent Diameter | Beet Ontology | Standard deviation of the diameter of a sphere that has an equivalent volume in relation to the persiperm |
| CO_333:1000434 | SeedCoatEqDiameter_STD | Standard Deviation Seed Coat Equivalent Diameter | Beet Ontology | Standard deviation of the diameter of a sphere that has an equivalent volume in relation to the seed coat |
| CO_333:1000435 | EmbFeretShape3d_STD | Standard Deviation Embryo Feret Shape 3d | Beet Ontology | Standard deviation of the diameter of the embryo corresponds to the maximum extent in a given direction |
| CO_333:1000436 | EmbLength3d_STD | Standard Deviation Embryo Lenght 3d | Beet Ontology | Standard deviation of the embryo length |
| CO_333:1000437 | EmbWidth3d_STD | Standard Deviation Embryo Width 3d | Beet Ontology | Standard deviation of the embryo width |
| CO_333:1000438 | SeedCoatFlatness_STD | Standard Deviation Seed Coat Flatness | Beet Ontology | Standard deviation of the flat surface of the seed coat |
| CO_333:1000439 | SeedCoatMaxThickness_STD | Standard Deviation Seed Coat Maximum Thickness | Beet Ontology | Standard deviation of the maximum thickness of the seed coat |
| CO_333:1000440 | PeriLength3d_STD | Standard Deviation Perisperm Lenght 3d | Beet Ontology | Standard deviation of the perisperm length |
| CO_333:1000441 | PeriWidth3d_STD | Standard Deviation Persiperm Width 3d | Beet Ontology | Standard deviation of the perisperm width |
| CO_333:1000442 | SeedCoatLength3d_STD | Standard Deviation Seed Coat lenght 3d | Beet Ontology | Standard deviation of the seed coat length |
| CO_333:1000443 | SeedCoatWidth3d_STD | Standard Deviation Seed Coat Width 3d | Beet Ontology | Standard deviation of the seed coat width |
| CO_333:1000444 | EmbSphericity_STD | Standard Deviation Embryo Sphericity index | Beet Ontology | Standard deviation of the surface characterization of the embryo |
| CO_333:1000445 | PeriSphericity_STD | Standard Deviation Perisperm Sphericity index | Beet Ontology | Standard deviation of the surface characterization of the perisperm |
| CO_333:1000446 | SeedCoatRugosity_STD | Standard Deviation Seed Coat Rugosity index | Beet Ontology | Standard deviation of the surface characterization of the seed coat |
| CO_333:1000447 | EmptyVolume_STD | Standard Deviation Empty Space Volume | Beet Ontology | Standard deviation of the volume of the empty space in the seed |
Data Set
| Name | Type | Linked studies identifier |
|---|---|---|
| AKER_Final | Project | Germination 5°C Germination 10°C EXTREME Germination 20°C EXTREME Germination 5°C EXTREME Prescreening Prescreening EXTREME Heterotophic growth EXTREME |
Contact
| Role | Name | Institution | |
|---|---|---|---|
| ScientificCoordinator & ProjectLeader | Sylvie DUCOURNAU | sylvie.ducournau_geves.fr | Station Nationale d’Essais de Semences - GEVES |
| DataCollector | Audrey DUPONT | audrey.dupont_geves.fr | Station Nationale d’Essais de Semences - GEVES |
| DataCollector | Laurence LE CORRE | laurence.lecorre_geves.fr | Station Nationale d’Essais de Semences - GEVES |
| ContactPerson | Aurélie CHARRIER | aurelie.charrier_geves.fr | Station Nationale d’Essais de Semences - GEVES |
| DataManager | Sherif HAMDY | Sherif.hamdy_geves.fr | Station Nationale d’Essais de Semences - GEVES |