Study Phenotyping Study: Morphometric internal EXTREME
Identification
Name
Morphometric internal EXTREME
Identifier
dXJuOklOUkFFLVVSR0kvc3R1ZHkvVE9NT19FWFQ=
Source
Data link
Project name
AKER
Description
Individual morphometric measurements of the different organs of beet seed (embryo, perisperm and seed coat) on 50 seeds per genotype using the 3D tomograph. Analyses of 136 extreme genotypes
Active
No
Seasons
2019-2020
Date
From 2019-11-13 to 2020-04-05
Location name
Genotype
| Accession number | Name | Taxon |
|---|---|---|
| B17Z10065 | B17Z10065 | Beta vulgaris subsp. vulgaris |
| B17Z10083 | B17Z10083 | Beta vulgaris subsp. vulgaris |
| B17Z10089 | B17Z10089 | Beta vulgaris subsp. vulgaris |
| B17Z10179 | B17Z10179 | Beta vulgaris subsp. vulgaris |
| B17Z10229 | B17Z10229 | Beta vulgaris subsp. vulgaris |
| B17Z10243 | B17Z10243 | Beta vulgaris subsp. vulgaris |
| B17Z10247 | B17Z10247 | Beta vulgaris subsp. vulgaris |
| B17Z10959 | B17Z10959 | Beta vulgaris subsp. vulgaris |
| B17Z11119 | B17Z11119 | Beta vulgaris subsp. vulgaris |
| B17Z11129 | B17Z11129 | Beta vulgaris subsp. vulgaris |
| B17Z11207 | B17Z11207 | Beta vulgaris subsp. vulgaris |
| B17Z11689 | B17Z11689 | Beta vulgaris subsp. vulgaris |
| B17Z11967 | B17Z11967 | Beta vulgaris subsp. vulgaris |
| B17Z12053 | B17Z12053 | Beta vulgaris subsp. vulgaris |
| B17Z12069 | B17Z12069 | Beta vulgaris subsp. vulgaris |
| B17Z12085 | B17Z12085 | Beta vulgaris subsp. vulgaris |
| B17Z12105 | B17Z12105 | Beta vulgaris subsp. vulgaris |
| B17Z12111 | B17Z12111 | Beta vulgaris subsp. vulgaris |
| B17Z12135 | B17Z12135 | Beta vulgaris subsp. vulgaris |
| B17Z12137 | B17Z12137 | Beta vulgaris subsp. vulgaris |
| B17Z12149 | B17Z12149 | Beta vulgaris subsp. vulgaris |
| B17Z12171 | B17Z12171 | Beta vulgaris subsp. vulgaris |
| B17Z12213 | B17Z12213 | Beta vulgaris subsp. vulgaris |
| B17Z12219 | B17Z12219 | Beta vulgaris subsp. vulgaris |
| B17Z12225 | B17Z12225 | Beta vulgaris subsp. vulgaris |
| B17Z12229 | B17Z12229 | Beta vulgaris subsp. vulgaris |
| B17Z12235 | B17Z12235 | Beta vulgaris subsp. vulgaris |
| B17Z12261 | B17Z12261 | Beta vulgaris subsp. vulgaris |
| B17Z12323 | B17Z12323 | Beta vulgaris subsp. vulgaris |
| B17Z12379 | B17Z12379 | Beta vulgaris subsp. vulgaris |
| B17Z12385 | B17Z12385 | Beta vulgaris subsp. vulgaris |
| B17Z12387 | B17Z12387 | Beta vulgaris subsp. vulgaris |
| B17Z12389 | B17Z12389 | Beta vulgaris subsp. vulgaris |
| B17Z12411 | B17Z12411 | Beta vulgaris subsp. vulgaris |
| B17Z12485 | B17Z12485 | Beta vulgaris subsp. vulgaris |
| B17Z12505 | B17Z12505 | Beta vulgaris subsp. vulgaris |
| B17Z12569 | B17Z12569 | Beta vulgaris subsp. vulgaris |
| B17Z12673 | B17Z12673 | Beta vulgaris subsp. vulgaris |
| B17Z12683 | B17Z12683 | Beta vulgaris subsp. vulgaris |
| B17Z12715 | B17Z12715 | Beta vulgaris subsp. vulgaris |
| B17Z12769 | B17Z12769 | Beta vulgaris subsp. vulgaris |
| B17Z13047 | B17Z13047 | Beta vulgaris subsp. vulgaris |
| B17Z13159 | B17Z13159 | Beta vulgaris subsp. vulgaris |
| B17Z13161 | B17Z13161 | Beta vulgaris subsp. vulgaris |
| B17Z13171 | B17Z13171 | Beta vulgaris subsp. vulgaris |
| B17Z13179 | B17Z13179 | Beta vulgaris subsp. vulgaris |
| B17Z13235 | B17Z13235 | Beta vulgaris subsp. vulgaris |
| B17Z13241 | B17Z13241 | Beta vulgaris subsp. vulgaris |
| B17Z13253 | B17Z13253 | Beta vulgaris subsp. vulgaris |
| B17Z13255 | B17Z13255 | Beta vulgaris subsp. vulgaris |
| B17Z13329 | B17Z13329 | Beta vulgaris subsp. vulgaris |
| B17Z13355 | B17Z13355 | Beta vulgaris subsp. vulgaris |
| B17Z13409 | B17Z13409 | Beta vulgaris subsp. vulgaris |
| B17Z13421 | B17Z13421 | Beta vulgaris subsp. vulgaris |
| B17Z13425 | B17Z13425 | Beta vulgaris subsp. vulgaris |
| B17Z13539 | B17Z13539 | Beta vulgaris subsp. vulgaris |
| B17Z13875 | B17Z13875 | Beta vulgaris subsp. vulgaris |
| B17Z13961 | B17Z13961 | Beta vulgaris subsp. vulgaris |
| B17Z13977 | B17Z13977 | Beta vulgaris subsp. vulgaris |
| B17Z14157 | B17Z14157 | Beta vulgaris subsp. vulgaris |
| B17Z14201 | B17Z14201 | Beta vulgaris subsp. vulgaris |
| B17Z14203 | B17Z14203 | Beta vulgaris subsp. vulgaris |
| B17Z14229 | B17Z14229 | Beta vulgaris subsp. vulgaris |
| B17Z14233 | B17Z14233 | Beta vulgaris subsp. vulgaris |
| B17Z14259 | B17Z14259 | Beta vulgaris subsp. vulgaris |
| B17Z14261 | B17Z14261 | Beta vulgaris subsp. vulgaris |
| B17Z14267 | B17Z14267 | Beta vulgaris subsp. vulgaris |
| B17Z14337 | B17Z14337 | Beta vulgaris subsp. vulgaris |
| B17Z14343 | B17Z14343 | Beta vulgaris subsp. vulgaris |
| B17Z14357 | B17Z14357 | Beta vulgaris subsp. vulgaris |
| B17Z14359 | B17Z14359 | Beta vulgaris subsp. vulgaris |
| B17Z14375 | B17Z14375 | Beta vulgaris subsp. vulgaris |
| B17Z14413 | B17Z14413 | Beta vulgaris subsp. vulgaris |
| B17Z14429 | B17Z14429 | Beta vulgaris subsp. vulgaris |
| B17Z14433 | B17Z14433 | Beta vulgaris subsp. vulgaris |
| B17Z14439 | B17Z14439 | Beta vulgaris subsp. vulgaris |
| B17Z14451 | B17Z14451 | Beta vulgaris subsp. vulgaris |
| B17Z14453 | B17Z14453 | Beta vulgaris subsp. vulgaris |
| B17Z14457 | B17Z14457 | Beta vulgaris subsp. vulgaris |
| B17Z14469 | B17Z14469 | Beta vulgaris subsp. vulgaris |
| B17Z14475 | B17Z14475 | Beta vulgaris subsp. vulgaris |
| B17Z14483 | B17Z14483 | Beta vulgaris subsp. vulgaris |
| B17Z14501 | B17Z14501 | Beta vulgaris subsp. vulgaris |
| B17Z14503 | B17Z14503 | Beta vulgaris subsp. vulgaris |
| B17Z14507 | B17Z14507 | Beta vulgaris subsp. vulgaris |
| B17Z14515 | B17Z14515 | Beta vulgaris subsp. vulgaris |
| B17Z14639 | B17Z14639 | Beta vulgaris subsp. vulgaris |
| B17Z14665 | B17Z14665 | Beta vulgaris subsp. vulgaris |
| B17Z14667 | B17Z14667 | Beta vulgaris subsp. vulgaris |
| B17Z14681 | B17Z14681 | Beta vulgaris subsp. vulgaris |
| B17Z14731 | B17Z14731 | Beta vulgaris subsp. vulgaris |
| B17Z14743 | B17Z14743 | Beta vulgaris subsp. vulgaris |
| B17Z14773 | B17Z14773 | Beta vulgaris subsp. vulgaris |
| B17Z14813 | B17Z14813 | Beta vulgaris subsp. vulgaris |
| B17Z14843 | B17Z14843 | Beta vulgaris subsp. vulgaris |
| B17Z14845 | B17Z14845 | Beta vulgaris subsp. vulgaris |
| B17Z14919 | B17Z14919 | Beta vulgaris subsp. vulgaris |
| B17Z14951 | B17Z14951 | Beta vulgaris subsp. vulgaris |
| B17Z14971 | B17Z14971 | Beta vulgaris subsp. vulgaris |
| B17Z14975 | B17Z14975 | Beta vulgaris subsp. vulgaris |
| B17Z14977 | B17Z14977 | Beta vulgaris subsp. vulgaris |
| B17Z15033 | B17Z15033 | Beta vulgaris subsp. vulgaris |
| B17Z15035 | B17Z15035 | Beta vulgaris subsp. vulgaris |
| B17Z15049 | B17Z15049 | Beta vulgaris subsp. vulgaris |
| B17Z15055 | B17Z15055 | Beta vulgaris subsp. vulgaris |
| B17Z15057 | B17Z15057 | Beta vulgaris subsp. vulgaris |
| B17Z15065 | B17Z15065 | Beta vulgaris subsp. vulgaris |
| B17Z15075 | B17Z15075 | Beta vulgaris subsp. vulgaris |
| B17Z15103 | B17Z15103 | Beta vulgaris subsp. vulgaris |
| B17Z15173 | B17Z15173 | Beta vulgaris subsp. vulgaris |
| B17Z15207 | B17Z15207 | Beta vulgaris subsp. vulgaris |
| B17Z15209 | B17Z15209 | Beta vulgaris subsp. vulgaris |
| B17Z15229 | B17Z15229 | Beta vulgaris subsp. vulgaris |
| B17Z15247 | B17Z15247 | Beta vulgaris subsp. vulgaris |
| B17Z15251 | B17Z15251 | Beta vulgaris subsp. vulgaris |
| B17Z15267 | B17Z15267 | Beta vulgaris subsp. vulgaris |
| B17Z15285 | B17Z15285 | Beta vulgaris subsp. vulgaris |
| B17Z15329 | B17Z15329 | Beta vulgaris subsp. vulgaris |
| B17Z15401 | B17Z15401 | Beta vulgaris subsp. vulgaris |
| B17Z15513 | B17Z15513 | Beta vulgaris subsp. vulgaris |
| B17Z15535 | B17Z15535 | Beta vulgaris subsp. vulgaris |
| B17Z15541 | B17Z15541 | Beta vulgaris subsp. vulgaris |
| B17Z15543 | B17Z15543 | Beta vulgaris subsp. vulgaris |
| B17Z15593 | B17Z15593 | Beta vulgaris subsp. vulgaris |
| B17Z15595 | B17Z15595 | Beta vulgaris subsp. vulgaris |
| B17Z15615 | B17Z15615 | Beta vulgaris subsp. vulgaris |
| B17Z16407 | B17Z16407 | Beta vulgaris subsp. vulgaris |
| B17Z16431 | B17Z16431 | Beta vulgaris subsp. vulgaris |
| B17Z16483 | B17Z16483 | Beta vulgaris subsp. vulgaris |
| B17Z16667 | B17Z16667 | Beta vulgaris subsp. vulgaris |
| B18Z10016 | B18Z10016 | Beta vulgaris subsp. vulgaris |
| B18Z10552 | B18Z10552 | Beta vulgaris subsp. vulgaris |
| B18Z10582 | B18Z10582 | Beta vulgaris subsp. vulgaris |
| B18Z10628 | B18Z10628 | Beta vulgaris subsp. vulgaris |
| B18Z10634 | B18Z10634 | Beta vulgaris subsp. vulgaris |
| B18Z10680 | B18Z10680 | Beta vulgaris subsp. vulgaris |
| STD1 | Commercial Standard_YG1 | Beta vulgaris subsp. vulgaris |
| STD2 | Commercial Standard_YG2 | Beta vulgaris subsp. vulgaris |
Variables
| Variable ID | Variable short name | Variable long name | Ontology name | Trait description |
|---|---|---|---|---|
| CO_333:1000317 | SeedCoatSurfArea | Seed Coat Surface Area | Beet Ontology | External surface area of the seed coat measured |
| CO_333:1000319 | EmbSurfArea | Embryo Surface Area | Beet Ontology | External surface area of the embryo measured |
| CO_333:1000320 | EmbVol | Embryo Volume | Beet Ontology | Volume of the embryo measured |
| CO_333:1000323 | PerispSurfArea | Perisperm Surface Area | Beet Ontology | External surface area of the perisperm measured |
| CO_333:1000324 | PerispVol | Perisperm Volume | Beet Ontology | Volume of the perisperm measured |
| CO_333:1000325 | SeedCoatVol | Seed Coat Volume | Beet Ontology | Volume of the seed coat measured |
| CO_333:1000389 | PerispShapeVA3d | Perisperm Shape VA3d | Beet Ontology | An index that equals to 1 in case that the perisperm equals to perfect a sphere |
| CO_333:1000390 | PerispSpDiameter | Perisperm SpDiameter mm | Beet Ontology | Diameter of the minimal sphere containing the perisperm |
| CO_333:1000391 | EmbShapeVA3d | Embryo Shape VA3d | Beet Ontology | An index that equals to 1 in case that the embryo equals to perfect a sphere |
| CO_333:1000392 | EmbSpDiameter | Embryo SpDiameter mm | Beet Ontology | Diameter of the minimal sphere containing the embryo |
| CO_333:1000393 | SeedCoatShapeVA3d | Seed Coat Shape VA3d | Beet Ontology | An index that equals to 1 in case that the seed coat equals to perfect a sphere |
| CO_333:1000394 | SeedCoatSpDiameter | Seed Coat SpDiameter mm | Beet Ontology | Diameter of the minimal sphere containing the seed coat |
| CO_333:1000395 | FillingRatio | Seed Filling Ratio | Beet Ontology | The ratio of the filled volume of the seed to the total volume of the seed |
| CO_333:1000400 | EmbSurfArea_STD | Standard Deviation Embryo Surface Area | Beet Ontology | Standard deviation of the external surface area of the embryo |
| CO_333:1000401 | PerispSurfArea_STD | Standard Deviation Perisperm Surface Area | Beet Ontology | Standard deviation of the external surface area of the perisperm |
| CO_333:1000402 | SeedCoatSurfArea_STD | Standard Deviation Seed Coat Surface Area | Beet Ontology | Standard deviation of the external surface area of the seed coat |
| CO_333:1000403 | EmbSpDiameter_STD | Standard Deviation Embryo SpDiameter mm | Beet Ontology | Standard deviation of the diameter of the minimal sphere containing the embryo |
| CO_333:1000404 | EmbShapeVA3d_STD | Standard Deviation Embryo Shape VA3d | Beet Ontology | Standard deviation of the shape factor of the embryo |
| CO_333:1000405 | PerispSpDiameter_STD | Standard Deviation Perisperm SpDiameter mm | Beet Ontology | Standard deviation of the diameter of the minimal sphere containing the perisperm |
| CO_333:1000406 | PerispShapeVA3d_STD | Standard Deviation Perisperm Shape VA3d | Beet Ontology | Standard deviation of the shape factor of the perisperm |
| CO_333:1000407 | SeedCoatSpDiameter_STD | Standard Deviation Seed Coat SpDiameter mm | Beet Ontology | Standard deviation of the diameter of the minimal sphere containing the seed coat |
| CO_333:1000408 | SeedCoatShapeVA3d_STD | Standard Deviation Seed Coat Shape VA3d | Beet Ontology | Standard deviation of the shape factor of the seed coat |
| CO_333:1000409 | EmbVol_STD | Standard Deviation Embryo Volume | Beet Ontology | Standard deviation of the volume of the embryo |
| CO_333:1000410 | PerispVol_STD | Standard Deviation Perisperm Volume | Beet Ontology | Standard deviation of the volume of the perisperm |
| CO_333:1000411 | SeedCoatVol_STD | Standard Deviation Seed Coat Volume | Beet Ontology | Standard deviation of the volume of the seed coat |
| CO_333:1000416 | SeedCoatFlatness | Seed Coat Flatness | Beet Ontology | Indicator of the flat surface of Seed Coat (the closer the value is to zero, the flatter the Seed Coat) |
| CO_333:1000417 | EmbFeretShape3d | Embryo Feret Shape 3d | Beet Ontology | The diameter of the embryo corresponds to the maximum extent in a given direction. It is used to quantify variations in embryo size as a function of direction. The minimum and maximum embryo diameter also makes it possible to characterize the shape of the embryo, or to obtain an oriented enclosing box. |
| CO_333:1000418 | EmbEqDiameter | Embryo Equivalent Diameter | Beet Ontology | The diameter of a sphere that has an equivalent volume in relation to the embryo |
| CO_333:1000419 | PeriEqDiameter | Perisperm Equivalent Diameter | Beet Ontology | The diameter of a sphere that has an equivalent volume in relation to the persiperm |
| CO_333:1000420 | SeedCoatEqDiameter | Seed Coat Equivalent Diameter | Beet Ontology | The diameter of a sphere that has an equivalent volume in relation to the seed coat |
| CO_333:1000421 | EmbLength3d | Embryo Lenght 3d | Beet Ontology | Embryo length measurements on the X-axis |
| CO_333:1000422 | PeriLength3d | Perisperm Lenght 3d | Beet Ontology | Perisperm length measurements on the X-axis |
| CO_333:1000423 | SeedCoatLength3d | Seed Coat lenght 3d | Beet Ontology | Seed Coat length measurements on the X-axis |
| CO_333:1000424 | EmbWidth3d | Embryo Width 3d | Beet Ontology | Embryo width measurements on the Y-axis |
| CO_333:1000425 | PeriWidth3d | Persiperm Width 3d | Beet Ontology | Perisperm width measurements on the Y-axis |
| CO_333:1000426 | SeedCoatWidth3d | Seed Coat Width 3d | Beet Ontology | Seed Coat width measurements on the Y-axis |
| CO_333:1000427 | SeedCoatMaxThickness | Seed Coat Maximum Thickness | Beet Ontology | The measure of the maximum thickness of the seed coat |
| CO_333:1000428 | EmbSphericity | Embryo Sphericity index | Beet Ontology | Surface characterization of the embryo |
| CO_333:1000429 | PeriSphericity | Perisperm Sphericity index | Beet Ontology | Surface characterization of the perisperm |
| CO_333:1000430 | SeedCoatRugosity | Seed Coat Rugosity index | Beet Ontology | Surface characterization of the seed coat |
| CO_333:1000431 | EmptyVolume | Empty Space Volume | Beet Ontology | The volume of the empty space in the seed |
| CO_333:1000432 | EmbEqDiameter_STD | Standard Deviation Embryo Equivalent Diameter | Beet Ontology | Standard deviation of the diameter of a sphere that has an equivalent volume in relation to the embryo |
| CO_333:1000433 | PeriEqDiameter_STD | Standard Deviation Perisperm Equivalent Diameter | Beet Ontology | Standard deviation of the diameter of a sphere that has an equivalent volume in relation to the persiperm |
| CO_333:1000434 | SeedCoatEqDiameter_STD | Standard Deviation Seed Coat Equivalent Diameter | Beet Ontology | Standard deviation of the diameter of a sphere that has an equivalent volume in relation to the seed coat |
| CO_333:1000435 | EmbFeretShape3d_STD | Standard Deviation Embryo Feret Shape 3d | Beet Ontology | Standard deviation of the diameter of the embryo corresponds to the maximum extent in a given direction |
| CO_333:1000436 | EmbLength3d_STD | Standard Deviation Embryo Lenght 3d | Beet Ontology | Standard deviation of the embryo length |
| CO_333:1000437 | EmbWidth3d_STD | Standard Deviation Embryo Width 3d | Beet Ontology | Standard deviation of the embryo width |
| CO_333:1000438 | SeedCoatFlatness_STD | Standard Deviation Seed Coat Flatness | Beet Ontology | Standard deviation of the flat surface of the seed coat |
| CO_333:1000439 | SeedCoatMaxThickness_STD | Standard Deviation Seed Coat Maximum Thickness | Beet Ontology | Standard deviation of the maximum thickness of the seed coat |
| CO_333:1000440 | PeriLength3d_STD | Standard Deviation Perisperm Lenght 3d | Beet Ontology | Standard deviation of the perisperm length |
| CO_333:1000441 | PeriWidth3d_STD | Standard Deviation Persiperm Width 3d | Beet Ontology | Standard deviation of the perisperm width |
| CO_333:1000442 | SeedCoatLength3d_STD | Standard Deviation Seed Coat lenght 3d | Beet Ontology | Standard deviation of the seed coat length |
| CO_333:1000443 | SeedCoatWidth3d_STD | Standard Deviation Seed Coat Width 3d | Beet Ontology | Standard deviation of the seed coat width |
| CO_333:1000444 | EmbSphericity_STD | Standard Deviation Embryo Sphericity index | Beet Ontology | Standard deviation of the surface characterization of the embryo |
| CO_333:1000445 | PeriSphericity_STD | Standard Deviation Perisperm Sphericity index | Beet Ontology | Standard deviation of the surface characterization of the perisperm |
| CO_333:1000446 | SeedCoatRugosity_STD | Standard Deviation Seed Coat Rugosity index | Beet Ontology | Standard deviation of the surface characterization of the seed coat |
| CO_333:1000447 | EmptyVolume_STD | Standard Deviation Empty Space Volume | Beet Ontology | Standard deviation of the volume of the empty space in the seed |
Data Set
| Name | Type | Linked studies identifier |
|---|---|---|
| AKER_Final | Project | Germination 5°C Germination 10°C EXTREME Germination 20°C EXTREME Germination 5°C EXTREME Prescreening Prescreening EXTREME Heterotophic growth EXTREME |
Contact
| Role | Name | Institution | |
|---|---|---|---|
| ScientificCoordinator & ProjectLeader | Sylvie DUCOURNAU | sylvie.ducournau_geves.fr | Station Nationale d’Essais de Semences - GEVES |
| DataCollector | Audrey DUPONT | audrey.dupont_geves.fr | Station Nationale d’Essais de Semences - GEVES |
| DataCollector | Laurence LE CORRE | laurence.lecorre_geves.fr | Station Nationale d’Essais de Semences - GEVES |
| ContactPerson | Aurélie CHARRIER | aurelie.charrier_geves.fr | Station Nationale d’Essais de Semences - GEVES |
| DataManager | Sherif HAMDY | Sherif.hamdy_geves.fr | Station Nationale d’Essais de Semences - GEVES |