Study : Round 2 RNA-sequencing analysis of the OsIMA overexpression and knockdown rice lines and Fe deficiency responsiveness of non-transformant (NT) rice.

Identification

• Name: Round 2 RNA-sequencing analysis of the OsIMA overexpression and knockdown rice lines and Fe deficiency responsiveness of non-transformant (NT) rice.
• Identifier: dXJuOkVWQS9zdHVkeS9QUkpOQTYzNzc3NQ==
• Data link: Link to this study on EBI European Nucleotide Archive
• Description: We report the comparison of transcript expression of Fe-sufficient roots of OsIMA overexpression lines IMA1OX-4, IMA2OX-1, OsIMA knockdown lines IMA1i-2, IMA2i-3, and corresponding NT, as well as Fe-deficient roots of NT, by RNA-Seq. Overall design: Total RNA was extracted from Fe-sufficient roots of OsIMA overexpression lines IMA1OX-4, IMA2OX-1, OsIMA knockdown lines IMA1i-2, IMA2i-3, and corresponding NT, as well as Fe-deficient roots of NT, and used for RNA-Seq library preparation, sequencing, mapping and quantification of each gene expression as read per million (RPM). Fe deficiency responses in NT was analyzed by the expression ratiios of NT1 -Fe/NT1 +Fe and NT3 -Fe/NT3 +Fe.
• Data files: SRR11940777; SRR11940776; SRR11940775; SRR11940774; SRR11940773; SRR11940772; SRR11940771; SRR11940770; SRR11940769; ERZ1728755; ERZ1728748; ERZ1728747; ERZ1728751; ERZ1728750; ERZ1728754; ERZ1728752; ERZ1728757; ERZ1733483