Study : Genebank resequencing of tetraploid cottons

Identification

• Name: Genebank resequencing of tetraploid cottons
• Identifier: dXJuOkVWQS9zdHVkeS9QUkpOQTYwNTM0NQ==
• Data link: Link to this study on EBI European Nucleotide Archive
• Description: Modern cultivated tetraploid cottons contain two species, Gossypium barbadense and Gossypium hirsutum. Among them, G. hirsutum is the significant species cultivated worldwide and contributes more than 90% natural fiber for the industry. To completely reveal the genetic diversity and population divergence within cultivated tetraploid cotton, we resequenced more than 1,700 accessions, which mostly included the South-China landraces, the elite introgression lines, and the obsoleted historic varieties. After integrating them with the major public resequencing data (PRJNA257154, PRJNA336461, PRJNA375965, PRJNA399050, and PRJNA414461), we obtained a whole Genebank variation map contained 3,248 tetraploid cottons (included 2,922 G. hirsutum). This variation map covered more than 1/3 of current G. hirsutum Genebank in China (~9,000 accessions), which could represent the genetic diversity of G. hirsutum.
• Data files: SRR12368803; SRR12368802; SRR12368691; SRR12368580; SRR12368469; SRR12369030; SRR12368919; SRR12368808; SRR12369240; SRR12369150; SRR12455850; SRR12368801; SRR12368790; SRR12368779; SRR12368768; SRR12368757; SRR12368746; SRR12368735; SRR12368724; SRR12368713