Study : RNA-Seq of wild-type (WT) and smn2 mutants for quantitative analysis of transcriptomes and mapping SMN2-dependent degraded regions

Identification

• Name: RNA-Seq of wild-type (WT) and smn2 mutants for quantitative analysis of transcriptomes and mapping SMN2-dependent degraded regions
• Identifier: dXJuOkVWQS9zdHVkeS9QUkpOQTYwMDg3Nw==
• Data link: Link to this study on EBI European Nucleotide Archive
• Description: To compare expression of defense-related genes between WT and smn2 mutant, we performed the RNA-seq analysis using the total RNA prepared from Arabidopsis WT and smn2 seedlings. RNA-seq profiling showed 250 Differentially Expressed Genes (DEGs) detected in smn2 compared to WT. Genome-wide mapping of DEG regions was also performed to elucidate SMN2-dependent degraded regions in defense-related genes. Overall design: Fourteen-day old WT and smn2 seedlings were treated with 0.1 uM flg22 for 0hr or 4hr with two biological replicates.
• Data files: SRR10876185; SRR10876192; SRR10876191; SRR10876190; SRR10876189; SRR10876188; SRR10876187; SRR10876186; ERZ1726464; ERZ1726463; ERZ1726461; ERZ1726460; ERZ1726457; ERZ1726465; ERZ1726458; ERZ1726462