Study : Single cell level analysis of the Arabidopsis root transcriptome and chromatin accessibility

Identification

• Name: Single cell level analysis of the Arabidopsis root transcriptome and chromatin accessibility
• Identifier: dXJuOkVWQS9zdHVkeS9QUkpOQTY0OTI2Nw==
• Data link: Link to this study on EBI European Nucleotide Archive
• Description: The nuclei of Arabidopsis root seedlings were isolated then use to establish a single cell level resolution transcriptome (sNucRNA-seq) and profile of chromatin accessibility (sNucATAC-seq) applying 10X Genomics technologies. Overall design: The nuclei of the root of 7 days-old Arabidopsis seedlings grown on agar MS medium were isolated. Upon isolation, the nuclei suspension was used to create sNucRNA-seq and sNucATAC-seq libraries. Five and two independent replicates were generated to perform these experiments., respectviely. The libraries were sequenced using high-throughput sequencing technologies. The data were analyzed using CellRanger, Seurat and Signac.
• Data files: SRR12340627; SRR12340628; SRR12340632; SRR12340631; SRR12340629; SRR12340630; SRR12340624; SRR12340625; SRR12340626; SRR12340623; SRR12340622; SRR12340621; SRR12340620