Study : High-throughput single-cell transcriptome profiling of plant cell types

Identification

• Name: High-throughput single-cell transcriptome profiling of plant cell types
• Identifier: dXJuOkVWQS9zdHVkeS9QUkpOQTUwNjAwNw==
• Data link: Link to this study on EBI European Nucleotide Archive
• Description: Single-cell transcriptome analysis of heterogeneous tissues can provide high-resolution windows into the spatiotemporal dynamics of developmental processes and environmental responses. Here we use the high-hroughput Drop-seq approach to profile the transcriptomes of over 12,000 individual cells from the Arabidopsis root. We identify marker genes for a diversity of cell types, capture cell-type frequency and gene expression alterations in response to sucrose, and illuminate the transcriptome changes that occur across endodermis development. Overall design: Single-cell transcriptomes were captured from over 12,000 cells, across 10 drop-seq runs (6 independent protoplast preparations)
• Data files: SRR8206664; SRR8206663; SRR8206662; SRR8206661; SRR8206660; SRR8206659; SRR8206658; SRR8206657; SRR8206656; SRR8206655; SRR8206654