Study : 3' Tag RNA-seq analysis of wild type (S. pimpinellifolium accession LA1589) and SUN NIL during tomato fruit development.

Identification

• Name: 3' Tag RNA-seq analysis of wild type (S. pimpinellifolium accession LA1589) and SUN NIL during tomato fruit development.
• Identifier: dXJuOkVWQS9zdHVkeS9QUkpOQTU1OTk5Ng==
• Data link: Link to this study on EBI European Nucleotide Archive
• Description: This study is to decipher the effect of SUN overexpressed NIL on gene expression during fruit development in tomato. RNA libraries were sequenced through Illumina Nextseq500 at Georgia Genomics and Bioinformatics Core (GGBC) of University of Georgia for 75 bp single end sequencing. Clean reads were mapped to ITAG3.2. Processed data are normalized into TPM. Overall design: mRNA profile of three dissected tissues (pericarp, seeds and columella) of 2, 4, 6, 8, 10dpa fruits in wildtype and SUN overexpressed NIL
• Data files: SRR9960072; SRR9960071; SRR9960070; SRR9960069; SRR9960089; SRR9960088; SRR9960087; SRR9960086; SRR9960085; SRR9960084; SRR9960083; SRR9960082; SRR9960081; SRR9960080; SRR9960079; SRR9960078; SRR9960077; SRR9960076; SRR9960075; SRR9960074

Genotype

Accession number	Name	Taxon
	accession LA1589	Solanum pimpinellifolium accession LA1589