Study : Comparative transcriptome analysis between resistant and susceptible tomato lines uncovers the response mechanism of Cf-16-mediated resistance to Cladosporium fulvum

Identification

• Name: Comparative transcriptome analysis between resistant and susceptible tomato lines uncovers the response mechanism of Cf-16-mediated resistance to Cladosporium fulvum
• Identifier: dXJuOkVWQS9zdHVkeS9QUkpOQTU1MjIyMA==
• Data link: Link to this study on EBI European Nucleotide Archive
• Description: Leaf mold disease caused by Cladosporium fulvum is a major disease in cultivated tomato plants and affects global tomato production. Some Cf genes, of which Cf-16 is an effective gene for resisting tomato leaf mold, are associated with leaf mold resistance; however, the molecular mechanism is largely unknown. We used comparative transcriptome analysis of C. fulvum-resistant (cv. Ontario7816, including the Cf-16 gene) and C. fulvum-susceptible (cv. Moneymaker) tomato lines to identify differentially expressed genes (DEGs) at 4 and 8 days postinfection with C. fulvum. Our results provide new insights into the resistance response mechanism of Cf genes to C. fulvum, especially the unique characteristics of Cf-16 in response to C. fulvum infection. Overall design: mRNA profiles of C. fulvum-resistant (cv. Ontario7816, including the Cf-16 gene) and C. fulvum-susceptible (cv. Moneymaker) tomato lines were generated by deep sequencing. The sequence reads that passed quality filters were analyzed at the transcript .
• Data files: SRR9624765; SRR9624764; SRR9624763; SRR9624762; SRR9624760; SRR9624759; SRR9624758; SRR9624757; SRR9624756; SRR9624755; SRR9624761; SRR9624754; SRR9624753; SRR9624752; SRR9624751; SRR9624750; SRR9624749; SRR9624748; SRR9624747; SRR9624746