Study : RNA-sequencing analysis of wild-type and osvil2 mutant panicles

Identification

• Name: RNA-sequencing analysis of wild-type and osvil2 mutant panicles
• Identifier: dXJuOkVWQS9zdHVkeS9QUkpOQTQyNzU4MQ==
• Data link: Link to this study on EBI European Nucleotide Archive
• Description: Oryza sativa VIN3-LIKE2 (OsVIL2) acts as an epigenetic regulator together with Polycomb Repressive Complex2 (PRC2), which mediates trimethylation of histone H3 lysine 27 (H3K27me3) on target chromatin. T-DNA mutants of OsVIL2 displayed abnormal spikelet development. To understand function of OsVIL2 during spikelet development, RNA-sequencing was conducted in developing panicles of wild-type (WT) and osvil2 mutants. Overall design: RNA-sequencing assays were performed to identify genes differentially expressed in osvil2 during early spikelet development. Two stages were examined: developing panicles in the length of 2 mm containing spikelets mostly at Sp4 or earlier, and developing panicles in the length of 4 mm containing spikelets at mainly Sp7 or younger.
• Data files: SRR6420524; SRR6420525; SRR6420544; SRR6420545; SRR6420542; SRR6420543; SRR6420540; SRR6420541; SRR6420538; SRR6420539; SRR6420536; SRR6420537; SRR6420534; SRR6420535; SRR6420532; SRR6420533; SRR6420530; SRR6420531; SRR6420528; SRR6420529; ERZ1145902; ERZ1145909; ERZ585148; ERZ585149; ERZ1145921; ERZ1145947; ERZ585127; ERZ585133; ERZ1145917; ERZ1146044; ERZ585139; ERZ585143; ERZ1145945; ERZ1145965; ERZ585132; ERZ585136; ERZ1145923; ERZ1146030; ERZ585128; ERZ585147