Study : RNA-Seq analysis comparing gene expression changes between Col-0 wild-type (WT) and sig2-2 mutant lines at the whole genome level

Identification

• Name: RNA-Seq analysis comparing gene expression changes between Col-0 wild-type (WT) and sig2-2 mutant lines at the whole genome level
• Identifier: dXJuOkVWQS9zdHVkeS9QUkpOQTQxMjg4OQ==
• Data link: Link to this study on EBI European Nucleotide Archive
• Description: To understand the transcriptional role of SIGMA FACTOR 2 (SIG2) in Red (R) light-dependent growth and development, RNA-sequencing analysis was perfomed to compare gene expression in a sig2-2 mutant and Col-0 wild-type seedlings grown in R light at two developmental stages (1-day and 7-day). Overall design: Total RNA was isolated from 1- or 7-d-old whole seedlings of Col-0 WT and sig2-2 mutant lines, grown in Red-light with three biological replicates. Sequencing samples were prepared using the Illumina TruSeq mRNA prep kit, and RNA-seq was performed by the Research Technology Support Facility at Michigan State University using the Illumina sequencing system.
• Data files: SRR6126606; SRR6217806; SRR6126617; SRR6217817; SRR6126616; SRR6217816; SRR6126615; SRR6217815; SRR6126614; SRR6217814; SRR6126613; SRR6217813; SRR6126612; SRR6217812; SRR6126611; SRR6217811; SRR6126610; SRR6217810; SRR6126609; SRR6217809; ERZ1177263; ERZ1177272; ERZ1177267; ERZ1177274; ERZ1177246; ERZ1177251; ERZ1177255; ERZ1177261; ERZ1177275; ERZ1177284; ERZ1177237; ERZ1177239; ERZ1177253; ERZ1177278; ERZ1177236; ERZ1177276; ERZ1177245; ERZ1177257; ERZ1177244; ERZ1177282