Study : RNA-Seq analysis comparing gene expression changes between Col-0 wild-type (WT) and sig2-2 mutant lines at the whole genome level
Identification
Name
RNA-Seq analysis comparing gene expression changes between Col-0 wild-type (WT) and sig2-2 mutant lines at the whole genome level
Identifier
dXJuOkVWQS9zdHVkeS9QUkpOQTQxMjg4OQ==
Description
To understand the transcriptional role of SIGMA FACTOR 2 (SIG2) in Red (R) light-dependent growth and development, RNA-sequencing analysis was perfomed to compare gene expression in a sig2-2 mutant and Col-0 wild-type seedlings grown in R light at two developmental stages (1-day and 7-day). Overall design: Total RNA was isolated from 1- or 7-d-old whole seedlings of Col-0 WT and sig2-2 mutant lines, grown in Red-light with three biological replicates. Sequencing samples were prepared using the Illumina TruSeq mRNA prep kit, and RNA-seq was performed by the Research Technology Support Facility at Michigan State University using the Illumina sequencing system.
Data files
- SRR6126606
- SRR6217806
- SRR6126617
- SRR6217817
- SRR6126616
- SRR6217816
- SRR6126615
- SRR6217815
- SRR6126614
- SRR6217814
- SRR6126613
- SRR6217813
- SRR6126612
- SRR6217812
- SRR6126611
- SRR6217811
- SRR6126610
- SRR6217810
- SRR6126609
- SRR6217809
- ERZ1177263
- ERZ1177272
- ERZ1177267
- ERZ1177274
- ERZ1177246
- ERZ1177251
- ERZ1177255
- ERZ1177261
- ERZ1177275
- ERZ1177284
- ERZ1177237
- ERZ1177239
- ERZ1177253
- ERZ1177278
- ERZ1177236
- ERZ1177276
- ERZ1177245
- ERZ1177257
- ERZ1177244
- ERZ1177282
Genotype
Accession number | Name | Taxon |
---|