Study : The dominant and poor penetrant phenotypes of the maize mutation Unstable factor for orange1 are caused by DNA methylation changes at a linked transposon

Identification

• Name: The dominant and poor penetrant phenotypes of the maize mutation Unstable factor for orange1 are caused by DNA methylation changes at a linked transposon
• Identifier: dXJuOkVWQS9zdHVkeS9QUkpOQTQ4MzIwMA==
• Data link: Link to this study on EBI European Nucleotide Archive
• Description: Transcriptional analysis of the Ufo1-1 mutant allele and wild type plants were used to identify the candidate gene using a k-mer based approach. The transcriptome data also revealed the altered expression of carbohydrate metabolic genes, which translates into elevated levels of soluble sugars in leaves and light-induced lesions found in mature Ufo1-1 leaves. Overall design: Genome-wide RNA and sRNA profiling was done by Illumina TruSeq sample preparation followed by high-throughput sequencing with Illumina HiSeq 2000 platform.
• Data files: SRR7611212; SRR7611211; SRR7611208; SRR7611207; SRR7611206; SRR7611205; SRR7611204; SRR7611203; SRR7611202; SRR7611201; SRR7611200; SRR7611199; SRR7611198; SRR7611197; SRR7611196; SRR7611195; SRR7611194; SRR7611193; SRR7611192; SRR7611191; ERZ1181663; ERZ1181691; ERZ1181675; ERZ1181684; ERZ1181668; ERZ1181650; ERZ1181658; ERZ1181670; ERZ1181683; ERZ1181654; ERZ1181661; ERZ1181676; ERZ1181693; ERZ1181662; ERZ1181689; ERZ1181655; ERZ1181656; ERZ1181653; ERZ1181673; ERZ1181688