Study : The effects of Arabidopsis genome duplication on the chromatin organization and transcriptional regulation

Identification

• Name: The effects of Arabidopsis genome duplication on the chromatin organization and transcriptional regulation
• Identifier: dXJuOkVWQS9zdHVkeS9QUkpOQTQ3MzMxNw==
• Data link: Link to this study on EBI European Nucleotide Archive
• Description: we performed Hi-C to probe the nuclear organization patterns after genome duplication in Arabidopsis, In connection with RNA-Seq data and ChIP-Seq data, we found that the transcription of a group of genes is specifically affected by the chromatin interactions with epigenome dynamics. Overall design: Performed Hi-C on autotetraploid and wide type Arabidopsis; examination of 2 different histone modifications H3K4me3 and H3K27me3 in autotetraploid and wilde type Arabidopsis, and RNA-seq also used to check the transcriptional changes in these two samples.
• Data files: SRR7224626; SRR7224625; SRR7224623; SRR7224624; SRR7224620; SRR7224621; SRR7224622; SRR7224618; SRR7224619; SRR7224615; SRR7224616; SRR7224617; SRR7224613; SRR7224614; SRR7224610; SRR7224611; SRR7224612; SRR7224608; SRR7224609; SRR7224605; ERZ1181846; ERZ1181840; ERZ1181855; ERZ1181842; ERZ1181845; ERZ1181850