Study : Comparative transcriptome analysis of TCV-infected wildtype and dcl1-9 mutant Arabidopsis thaliana

Identification

• Name: Comparative transcriptome analysis of TCV-infected wildtype and dcl1-9 mutant Arabidopsis thaliana
• Identifier: dXJuOkVWQS9zdHVkeS9QUkpOQTMzNjA1OA==
• Data link: Link to this study on EBI European Nucleotide Archive
• Description: Belonging to the Carmovirus family, Turnip crinkle virus (TCV) is a positive-strand RNA virus that can infect Arabidopsis. Most Arabidopsis ecotypes are highly susceptible to TCV, except for the TCV resistant line Di-17 derived from ecotype Dijon. Previous studies showed that many of the stress related genes have changed significantly after TCV infection. Besides the virus-triggered genes, small RNAs also play critical roles in plant defense by triggering either transcriptional and/or post-transcriptional gene silencing. In this study, TCV-infected wildtype Arabidopsis thaliana and dcl1-9 mutant plants were subjected to transcriptome and small RNA analysis to investigate the role of DCL1 in virus defense network. Overall design: 4 week old Arabidopsis thaliana ecotype Col-0 and dcl1-9 homozygous plants were inoculated by TCV. Leaves were collected at 7 dpi for RNA and sRNA extraction.
• Data files: SRR3992508; SRR3992507; SRR3992506; SRR3992517; SRR3992516; SRR3992515; SRR3992514; SRR3992513; SRR3992512; SRR3992511; SRR3992510; SRR3992509; ERZ1162599; ERZ393006; ERZ520736; ERZ1162603; ERZ393007; ERZ520731; ERZ1162587; ERZ393000; ERZ520729; ERZ1162608; ERZ393003; ERZ520734; ERZ1162595; ERZ393010; ERZ520737; ERZ1162593; ERZ393008; ERZ520728; ERZ1162594; ERZ393011