Study : Response of potato sRNAome to PVYNTN infection [degradome-Seq]

Identification

• Name: Response of potato sRNAome to PVYNTN infection [degradome-Seq]
• Identifier: dXJuOkVWQS9zdHVkeS9QUkpOQTMzNTc2MA==
• Data link: Link to this study on EBI European Nucleotide Archive
• Description: We aimed at unraveling the role of small RNAs in a complex immune signaling network controlling defense responses that render the plant tolerant to viral infection. We have identified and quantified miRNAs, phasiRNA and virus-derived small RNAs in both, the PVYNTN-tolerant cv. Désirée and its susceptible transgenic counterpart impaired in accumulation of salicylic acid (NahG-Désirée). We have constructed a small RNA regulatory network using in silico prediction results as well as degradome sequencing to link our data to the physiological response (target transcript abundances and hormone levels). Overall design: Degradome-seq data of PVYNTN-infected (PVY) and mock (MOCK) inoculated potato plants of cv. Désirée and NahG-Désirée. Samples were obtained by pooling RNA samples of three plants per treatment.
• Data files: SRR3979461; SRR3979463; SRR3979462; SRR3979460