Study : Transcript profiling of the roots and leaves of opt3-2 mutant and wild type Arabidopsis
Identification
Name
Transcript profiling of the roots and leaves of opt3-2 mutant and wild type Arabidopsis
Identifier
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Description
Illumina 100bp single end sequencing was used to profile the transcriptomes of wild type (Columbia) and opt3-2 mutant Arabdiopsis leaves and roots under hydroponic conditions ( 4 weeks old, bolting stage). Sequencing resulted in 381 million uniquely mapping reads accross 36 libraries. Each sample was barcoded and divided into three sequencing lanes, while each genotype/tissue combination is represented by 3 biological replicates consisting of 3-4 individual plants (2 genotypes x 2 tissues x 3 biological replicates x 3 technical replicates = 36 libraries). Our results show the leaves and roots of the opt3-2 mutant have different iron sensing transcriptional programs in place which is independent of the iron status of the plant. Overall design: Transcript profiling of the roots and leaves of opt3-2 mutant and wild type Arabidopsis
Data files
- SRR3229128
- SRR3229129
- SRR3229130
- SRR3229095
- SRR3229096
- SRR3229097
- SRR3229098
- SRR3229099
- SRR3229100
- SRR3229101
- SRR3229102
- SRR3229103
- SRR3229104
- SRR3229105
- SRR3229106
- SRR3229111
- SRR3229112
- SRR3229113
- SRR3229107
- SRR3229108
- ERZ1134069
- ERZ392838
- ERZ512082
- ERZ1134074
- ERZ392837
- ERZ512084
- ERZ1134111
- ERZ392810
- ERZ512095
- ERZ1134099
- ERZ392803
- ERZ512090
- ERZ1133821
- ERZ392812
- ERZ512101
- ERZ1134084
- ERZ392835
- ERZ512086
- ERZ1133886
- ERZ392828
Genotype
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