Study : Genome-wide expression profiling of grapevine (Vitis vinifera cv Cabernet Sauvignon) woody stems and asymptomatic leaves during a time course of infection by Neofusicoccum parvum

Identification

• Name: Genome-wide expression profiling of grapevine (Vitis vinifera cv Cabernet Sauvignon) woody stems and asymptomatic leaves during a time course of infection by Neofusicoccum parvum
• Identifier: dXJuOkVWQS9zdHVkeS9QUkpOQTM4MzE2MA==
• Description: Transcriptome profiling by RNA sequencing determined the genome-wide patterns of expression of grape and N. parvum genes in stem (local) and leaf (distal) tissues during an extensive interaction time course. Overall design: Potted V. vinifera cv. Cabernet Sauvignon clone FPS 19 plants were inoculated with N. parvum UCD646So mycelia (ATCC number: MYA-3706). Stems and leaves were collected at seven time points: 0 hour post-inoculation (hpi), 3 hpi, 24 hpi, 2 weeks post-inoculation (wpi), 6 wpi, 8 wpi, and 12 wpi. Three biological replicates, corresponding to a pool of leaves from four plants for the distal sampling and to individual stems (-1 cm) in the case of the local sampling, were used for RNA extraction.
• Active: No
• Data files: SRR5453891; SRR5453890; SRR5453879; SRR5453878; SRR5453877; SRR5453876; SRR5453840; SRR5453839; SRR5453838; SRR5453837; SRR5453836; SRR5453835; SRR5453834; SRR5453833; SRR5453832; SRR5453831; SRR5453854; SRR5453853; SRR5453852; SRR5453851; ERZ1158750; ERZ629316; ERZ1158515; ERZ629352; ERZ1158434; ERZ629287; ERZ1158520; ERZ629353; ERZ1158467; ERZ629295; ERZ1158545; ERZ629354; ERZ1158687; ERZ629285; ERZ1158762; ERZ629318; ERZ1158739; ERZ629313; ERZ1158650; ERZ629254