Study : Root transcriptomes for the 19 parents of the Arabidopsis thaliana MAGIC lines

Identification

• Name: Root transcriptomes for the 19 parents of the Arabidopsis thaliana MAGIC lines
• Identifier: dXJuOkVWQS9zdHVkeS9QUkpOQTIzMTA4OQ==
• Data link: Link to this study on EBI European Nucleotide Archive
• Description: We produced RNA-Seq reads from messenger RNA isolated from root tissue for the 19 MAGIC founder accessions (inbred strains) of Arabidopsis thaliana (see Gan et al. 2011. Nature 477:419-23 for a description of the MAGIC genetic mapping resource). The read data was generated with biological replication (two replicates). The resulting RNA-Seq data provide a resource to assess root gene expression across different accessions of A. thaliana. Comparable RNA-Seq read data for the MAGIC founder accessions for aerial seedling tissue has previously been released under GEO series GSE30720 (Gan et al. 2011. Nature, 477:419-23). Overall design: Examination of RNA expression in root for the 19 Arabidopsis thaliana accessions used as parents for the MAGIC lines (parental accessions are Bur-0, Can-0, Col-0, Ct-1, Edi-0, Hi-0, Kn-0, Ler-0, Mt-0, No-0, Oy-0, Po-0, Rsch-4, Sf-2, Tsu-0, Wil-2, Ws-0, Wu-0, Zu-0).
• Data files: SRR1046909; SRR1046906; SRR1046908; SRR1046905; SRR1046910; SRR1046911; SRR1046912; SRR1046907; SRR1046916; SRR1046913; SRR1046917; SRR1046915; SRR1046919; SRR1046918; SRR1046914; SRR1046920; SRR1046921; SRR1046924; SRR1046923; SRR1046925; ERZ1124855; ERZ272057; ERZ306617; ERZ508684; ERZ1124804; ERZ272049; ERZ306636; ERZ508664; ERZ1124865; ERZ272074; ERZ306619; ERZ508687; ERZ1124803; ERZ272073; ERZ306645; ERZ508669; ERZ1109338; ERZ272051; ERZ306649; ERZ508670