Study : Multiple tissue RNA sequencing of 17 Arabidopsis thaliana MAGIC founder accessions

Identification

• Name: Multiple tissue RNA sequencing of 17 Arabidopsis thaliana MAGIC founder accessions
• Identifier: dXJuOkVWQS9zdHVkeS9QUkpOQTIzMTA4OA==
• Data link: Link to this study on EBI European Nucleotide Archive
• Description: We produced RNA-Seq reads from messenger RNA isolated from seedling, root, and floral bud tissue for 17 MAGIC founder accessions (inbred strains) of Arabidopsis thaliana (see Gan et al. 2011. Nature, 477:419-23 for a description of the MAGIC genetic mapping resource). The resulting RNA-Seq data provide a resource to assess tissue-specific expression across different accessions of A. thaliana. Note that comparable read data for accessions Col-0 and Can-0, which are also founders of the MAGIC lines, has previously been released under GEO series GSE30795 (Gan et al. 2011. Nature, 477:419-23). Overall design: Examination of RNA expression across tissues (seedling, root, floral bud) for 17 Arabidopsis thaliana accessions (Bur-0, Ct-1, Edi-0, Hi-0, Kn-0, Ler-0, Mt-0, No-0, Oy-0, Po-0, Rsch-4, Sf-2, Tsu-0, Wil-2, Ws-0, Wu-0, Zu-0).
• Data files: SRR1046880; SRR1046876; SRR1046882; SRR1046883; SRR1046875; SRR1046881; SRR1046874; SRR1046886; SRR1046884; SRR1046887; SRR1046885; SRR1046892; SRR1046889; SRR1046891; SRR1046888; SRR1046893; SRR1046890; SRR1046894; SRR1046897; SRR1046896; ERZ1110282; ERZ272004; ERZ306583; ERZ508502; ERZ1124709; ERZ272040; ERZ306601; ERZ508488; ERZ1124728; ERZ271999; ERZ306572; ERZ508495; ERZ1124707; ERZ272023; ERZ306598; ERZ508487; ERZ1124692; ERZ272008; ERZ306607; ERZ508472