Study : Transcriptome analysis on the white pine-blister rust interactions

Identification

• Name: Transcriptome analysis on the white pine-blister rust interactions
• Identifier: dXJuOkVWQS9zdHVkeS9QUkpOQTIyMjgzOQ==
• Data link: Link to this study on EBI European Nucleotide Archive
• Description: The invasive fungus Cronartium ribicola causes white pine blister rust (WPBR), the most destructive disease affecting native five-needle pines in North America. Phenotype-based selection of genetic resistance currently used in conifer breeding programs is a long-term, high cost process. Genotype-based or genomic selection would provide a more effective breeding strategy. This project uses a combed approach of RNA-Seq analysis and high-throughput SNP genotyping technologies to discover functional SNP markers for breeding selection of a desirable trait without phenotyping in western white pine, limber pine, whitebark pine, and other five-needle pines.
• Data files: SRR1013833; SRR1013836; SRR1013837; SRR1574690; SRR1574691; SRR1574692; SRR3273235; SRR3273236; SRR3273237