Study : High-resolution mapping of ribosome footprints from Arabidopsis thaliana

Identification

• Name: High-resolution mapping of ribosome footprints from Arabidopsis thaliana
• Identifier: dXJuOkVWQS9zdHVkeS9QUkpOQTIxODAyNw==
• Data link: Link to this study on EBI European Nucleotide Archive
• Description: Post-transcriptional gene regulation plays a significant role in the response to oxygen deprivation. Here, we utilized advances in next-generation sequencing technology to examine changes in transcriptional control, mRNA loading on to polysome, and regulation of ribosome activity during mRNA translation in 7-day-old Arabidopsis seedlings subjected to 2 hour hypoxia treatment. Overall design: 14 samples, 2 conditions (2 hr hypoxia and 2 hr normoxia), 2 bioreplicates of 3 RNA pools (total mRNA, immunopurified (TRAP) polysomal mRNA, ribosome footprints), 1 bioreplicate of 1 RNA pool (immunopurified (TRAP)-ribosome footprints).
• Data files: SRR966472; SRR966473; SRR966475; SRR966476; SRR966478; SRR966474; SRR966477; SRR966481; SRR966484; SRR966482; SRR966483; SRR966480; SRR966485; SRR966479

Genotype

Accession number	Name	Taxon
	transgenics 35S	Arabidopsis thaliana