Study : Glycine max Variation

Identification

• Name: Glycine max Variation
• Identifier: dXJuOkVWQS9zdHVkeS9QUkpOQTI4NzI2Ng==
• Data link: Link to this study on EBI European Nucleotide Archive
• Description: In this work, we perform a detailed examination of the imputation of missing genotypes in a catalog of SNP markers obtained via a genotyping by sequencing (GBS) approach among a collection of 301 soybean lines. In addition, we extend the work by using imputation to integrate two highly complementary SNP datasets (from GBS and a SNP array). In all cases, we measured the accuracy of genotype imputation through the resequencing of a subset of the lines and show that the resulting datasets are highly accurate. In a final segment of the work, we show that performing genome-wide association scans with superior marker coverage (resulting from marker imputation) leads to improved QTL detection.
• Data files: SRR2072762; SRR2072763; SRR2072764; SRR2072765; SRR2072766; SRR2072767; SRR2072768; SRR2072769; SRR2072770; SRR2072771; SRR2072772; SRR2072773; SRR2072774; SRR2072775; SRR2072776; SRR2072777; SRR2072778; SRR2072779; SRR2072780; SRR2072781