Study : Arabidopsis thaliana cultivar:Col-0 Transcriptome or Gene expression

Identification

• Name: Arabidopsis thaliana cultivar:Col-0 Transcriptome or Gene expression
• Identifier: dXJuOkVWQS9zdHVkeS9QUkpOQTI3MDY3MA==
• Data link: Link to this study on EBI European Nucleotide Archive
• Description: Using an adapted version of nanoCAGE (nanoCAGE-2000) for sequencing on the Illumina HiSeq-2000, we sequenced the 5 ends of gene transcripts in Arabidopsis thaliana. The protocol targets the 5 end of transcripts by utilizing the cap-dependent template switching properties of reverse transcriptase, thereby capturing the transcriptional start sites (TSS) of RNA polymerase II genes. The end-goal being improved coverage of the TSSs while leveraging the lower RNA input requirements afforded by the nanoCAGE protocol.
• Data files: SRR2097904; SRR2102806; SRR2102895