Study : Arabidopsis thaliana Transcriptome or Gene expression

Identification

• Name: Arabidopsis thaliana Transcriptome or Gene expression
• Identifier: dXJuOkVWQS9zdHVkeS9QUkpOQTI2NjkwOA==
• Data link: Link to this study on EBI European Nucleotide Archive
• Description: Alternative splicing is prevalent in plants, but little is known about its regulation in the context of developmental and signaling pathways. In a genetic screen, we identified a new factor, AtRTF2, that influences pre-mRNA splicing and is essential for embryonic development in Arabidopsis thaliana. A genome-wide analysis using RNA-seq indicated that 12% of total introns are retained to a significant degree in atrtf2 mutants. Based on yeast two-hybrid and affinity purification-mass spec analysis, we suggest that AtRTF2 may act in ubiquitin-based regulation of pre-mRNA splicing and membrane signaling to the spliceosome.
• Data files: SRR1652313; SRR1652314; SRR1652315; SRR1652316; SRR1652317; ERZ1126404; ERZ272757; ERZ307324; ERZ509956; ERZ1126406; ERZ272755; ERZ307322; ERZ509957; ERZ1126411; ERZ272763; ERZ307327; ERZ509955; ERZ1126403; ERZ272756; ERZ307323; ERZ509954; ERZ1109849; ERZ272758; ERZ307325; ERZ509958