Study : Comparative transcriptome profiling of a rice line carrying Xa39 and its parents triggered by Xanthomonas oryzae pv. oryzae provides novel insights into the broad-spectrum hypersensitive response

Identification

• Name: Comparative transcriptome profiling of a rice line carrying Xa39 and its parents triggered by Xanthomonas oryzae pv. oryzae provides novel insights into the broad-spectrum hypersensitive response
• Identifier: dXJuOkVWQS9zdHVkeS9QUkpOQTI2NDI3OA==
• Data link: Link to this study on EBI European Nucleotide Archive
• Description: To dissect the molecular mechanisms of resistance mediated by Xa39,the transcriptome profiling of a rice line carrying Xa39 and its parents at the early stage of Xoo infection were investigated. A rice introgression line H471 carrying Xa39 exhibited a typical local hypersensitive response phenotype, accompanied by programmed cell death after inoculation with the Xoo Philippines’ race 9b.Our results indicated there might be cross-talk between the Xa39-mediated signal transduction cascades and the GA/BR signaling pathway, and the defense mechanism was related to diverse kinases, transcription factors, post-translational regulation, and R genes. Overall design: Transcriptome profiling of H471 and its parents (HHZ and P28) at 1 and 2 days post-inoculation was performed using RNA sequencing.
• Data files: SRR1615266; SRR1615264; SRR1615267; SRR1615269; SRR1615268; SRR1615265; SRR1615274; SRR1615280; SRR1615271; SRR1615273; SRR1615277; SRR1615278; SRR1615270; SRR1615272; SRR1615279; SRR1615276; SRR1615281; SRR1615275; ERZ1133255; ERZ281468; ERZ311385; ERZ559125; ERZ1133249; ERZ281478; ERZ311383; ERZ559127; ERZ1133279; ERZ281475; ERZ311392; ERZ559126; ERZ1133251; ERZ281477; ERZ311373; ERZ559128; ERZ1133304; ERZ281466; ERZ311382; ERZ558891