Study : RNAseq analysis of NGATHA loss and gain of function alleles

Identification

• Name: RNAseq analysis of NGATHA loss and gain of function alleles
• Identifier: dXJuOkVWQS9zdHVkeS9QUkpOQTI0MjkxNQ==
• Data link: Link to this study on EBI European Nucleotide Archive
• Description: The four NGATHA genes (NGA) form a small subfamily within the large family of B3-domain transcription factors of Arabidopsis thaliana. NGA genes act redundantly to direct the development of the apical tissues of the gynoecium, the style and the stigma. Previous studies indicate that NGA genes could exert this function at least partially by directing the synthesis of auxin at the distal end of the developing gynoecium through the upregulation of two different YUCCA genes, which encode flavin monooxygenases involved in auxin biosynthesis. We have compared three developing pistil transcriptome data sets from wildtype, nga quadruple mutants and a 35S::NGA3 line. The differentially expressed genes showed a significant enrichment for auxin-related genes, supporting the idea of NGA genes as major regulators of auxin accumulation and distribution within the developing gynoecium. Overall design: Expression profile comparation of wild type, nga mutant and NGA overexpression
• Data files: SRR1207197; SRR1207200; SRR1207194; SRR1207195; SRR1207201; SRR1207196; SRR1207198; SRR1207199; ERZ1125269; ERZ272279; ERZ306846; ERZ509338; ERZ1125270; ERZ272276; ERZ306841; ERZ509339; ERZ1125273; ERZ272277; ERZ306844; ERZ509337; ERZ1110382; ERZ272282; ERZ306848; ERZ509336; ERZ1110383; ERZ272278; ERZ306845; ERZ509343