Study : A first-generation Haplotype map (HapMap) of tea (Camellia sinensis L. O. Kuntz)

Identification

Name
A first-generation Haplotype map (HapMap) of tea (Camellia sinensis L. O. Kuntz)
Identifier
dXJuOkVWQS9zdHVkeS9QUkpFQjQzMTU5
Source
EBI European Nucleotide Archive logo
Data link
Link to this study on EBI European Nucleotide Archive
Description
Here we have generated first HapMap of tea genome. RNA seq data was downloaded for a total of 369 tea accessions from National Genomics Data Center, BGI (Project ID: CRA001438; https://bigd.big.ac.cn/search?dbId=gsaamp;q=CRA001438) and EMBL-EBI (Project ID: PRJNA222497; https://www.ebi.ac.uk/ena/data/view/PRJNA222497). Tea polymorphisms were determined from these 369 taxa by mapping data against reference genome of tea (CSS_V1.2) (https://github.com/JiedanChen/TeaGenomeData) with mapping quality threshold 30.
Data files

Genotype

Accession number Name Taxon