Min coverage:	10
Min reads2:	4
Min var freq:	0.3
Min avg qual:	30
P-value thresh:	0.0010
Reading input from /home/muscares/MAPHiTS_pipeline/PN40024_all/maphits/PN40024_all.pileup
467615153 bases in pileup file
396191005 met minimum coverage of 10x
126302 SNPs predicted