Min coverage:	10
Min reads2:	4
Min var freq:	0.3
Min avg qual:	30
P-value thresh:	0.0010
Reading input from /home/mbras/tmp/Tmp_MAPHiTS_12453/Pileup.pileup
460566440 bases in pileup file
88705714 met minimum coverage of 10x
45340 SNPs predicted