Protein : Qrob_P0761720.2 Q. robur
Protein Identifier  ? Qrob_P0761720.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) KOG0252//KOG0253//KOG0254//KOG0255//KOG0569//KOG1330//KOG2532 - Inorganic phosphate transporter [Inorganic ion transport and metabolism]. // Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]. // Predicted transporter (major facilitator superfamily) [General function prediction only]. // Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]. // Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]. // Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]. // Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 503  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0022857 transmembrane transporter activity Enables the transfer of a substance from one side of a membrane to the other.
GO:0022891 substrate-specific transmembrane transporter activity Enables the transfer of a specific substance or group of related substances from one side of a membrane to the other.
GO:0005215 transporter activity Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_007705 8 501 + 494 Gaps:1 95.36 517 65.92 0.0 Major facilitator superfamily protein
blastp_kegg lcl|rcu:RCOM_1397030 8 501 + 494 Gaps:2 95.72 514 65.04 0.0 sugar transporter putative (EC:1.3.1.74)
blastp_kegg lcl|cmo:103485816 13 501 + 489 Gaps:3 94.21 518 64.75 0.0 sugar transport protein 10-like
blastp_kegg lcl|cmo:103485814 13 501 + 489 Gaps:3 94.21 518 65.16 0.0 sugar transport protein 10-like
blastp_kegg lcl|pop:POPTR_0005s09290g 7 501 + 495 Gaps:1 96.48 512 63.97 0.0 POPTRDRAFT_860691 hypothetical protein
blastp_kegg lcl|pop:POPTR_0007s07530g 11 501 + 491 Gaps:2 95.14 514 64.83 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0007s07640g 12 501 + 490 Gaps:2 95.31 512 64.14 0.0 POPTRDRAFT_869344 hypothetical protein
blastp_kegg lcl|pop:POPTR_0007s07550g 7 501 + 495 Gaps:2 96.48 511 64.91 0.0 POPTRDRAFT_802779 hypothetical protein
blastp_kegg lcl|pop:POPTR_0007s07540g 7 501 + 495 Gaps:2 96.48 511 64.91 0.0 POPTRDRAFT_802778 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10033362mg 12 501 + 490 Gaps:2 94.57 516 63.73 0.0 hypothetical protein
blastp_uniprot_sprot sp|Q9LT15|STP10_ARATH 18 501 + 484 Gaps:3 93.58 514 61.95 0.0 Sugar transport protein 10 OS Arabidopsis thaliana GN STP10 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SX48|STP9_ARATH 18 501 + 484 Gaps:4 93.23 517 61.00 0.0 Sugar transport protein 9 OS Arabidopsis thaliana GN STP9 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FMX3|STP11_ARATH 10 498 + 489 Gaps:1 94.94 514 60.04 0.0 Sugar transport protein 11 OS Arabidopsis thaliana GN STP11 PE 1 SV 1
blastp_uniprot_sprot sp|Q39228|STP4_ARATH 12 501 + 490 Gaps:3 94.75 514 59.14 0.0 Sugar transport protein 4 OS Arabidopsis thaliana GN STP4 PE 1 SV 1
blastp_uniprot_sprot sp|Q41144|STC_RICCO 12 501 + 490 Gaps:3 93.50 523 56.85 0.0 Sugar carrier protein C OS Ricinus communis GN STC PE 2 SV 1
blastp_uniprot_sprot sp|P23586|STP1_ARATH 12 501 + 490 Gaps:3 93.68 522 55.62 0.0 Sugar transport protein 1 OS Arabidopsis thaliana GN STP1 PE 1 SV 2
blastp_uniprot_sprot sp|O65413|STP12_ARATH 10 499 + 490 Gaps:6 96.06 508 57.79 0.0 Sugar transport protein 12 OS Arabidopsis thaliana GN STP12 PE 2 SV 1
blastp_uniprot_sprot sp|Q94AZ2|STP13_ARATH 10 502 + 493 Gaps:3 93.54 526 51.42 0.0 Sugar transport protein 13 OS Arabidopsis thaliana GN STP13 PE 1 SV 2
blastp_uniprot_sprot sp|O04249|STP7_ARATH 7 501 + 495 Gaps:6 95.32 513 51.94 0.0 Sugar transport protein 7 OS Arabidopsis thaliana GN STP7 PE 2 SV 1
blastp_uniprot_sprot sp|Q07423|HEX6_RICCO 10 501 + 492 Gaps:11 95.88 510 51.74 5e-179 Hexose carrier protein HEX6 OS Ricinus communis GN HEX6 PE 2 SV 1
rpsblast_cdd gnl|CDD|200987 26 489 + 464 Gaps:24 99.78 449 35.04 3e-95 pfam00083 Sugar_tr Sugar (and other) transporter.
rpsblast_cdd gnl|CDD|162084 2 485 + 484 Gaps:30 98.96 481 34.66 3e-83 TIGR00879 SP MFS transporter sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083).
rpsblast_cdd gnl|CDD|182225 22 490 + 469 Gaps:61 96.87 479 31.25 9e-58 PRK10077 xylE D-xylose transporter XylE Provisional.
rpsblast_cdd gnl|CDD|191813 78 434 + 357 Gaps:48 89.88 346 22.51 2e-15 pfam07690 MFS_1 Major Facilitator Superfamily.
rpsblast_cdd gnl|CDD|119392 78 224 + 147 Gaps:3 40.91 352 31.25 9e-15 cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters symporters and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions sugar phosphates drugs neurotransmitters nucleosides amino acids and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate while symporters and antiporters transport two substrates in the same or in opposite directions respectively across membranes. MFS proteins are typically 400 to 600 amino acids in length and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members GlpT (glycerol-3-phosphate transporter) LacY (lactose permease) and EmrD (multidrug transporter) MFS proteins are thought to function through a single substrate binding site alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4 which is impaired in type II diabetes and glucose-6-phosphate transporter (G6PT) which causes glycogen storage disease when mutated..
rpsblast_cdd gnl|CDD|162097 79 484 + 406 Gaps:56 75.25 505 23.42 2e-13 TIGR00898 2A0119 cation transport protein.
rpsblast_cdd gnl|CDD|162085 84 226 + 143 Gaps:4 100.00 141 26.24 4e-10 TIGR00880 2_A_01_02 Multidrug resistance protein.
rpsblast_cdd gnl|CDD|162095 94 353 + 260 Gaps:11 64.07 398 23.92 5e-10 TIGR00895 2A0115 benzoate transport.
rpsblast_cdd gnl|CDD|188094 108 428 + 321 Gaps:64 73.86 394 26.80 2e-09 TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083) including citrate-H+ symporters dicarboxylate:H+ symporters the proline/glycine-betaine transporter ProP etc.
rpsblast_cdd gnl|CDD|32643 81 431 + 351 Gaps:62 73.86 394 25.09 9e-09 COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism].

40 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 143 168 26 PS00217 none Sugar transport proteins signature 2. IPR005829
Phobius 344 349 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 171 192 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 3 501 499 PTHR24063 none none none
ProSiteProfiles 25 478 454 PS50850 none Major facilitator superfamily (MFS) profile. IPR020846
Phobius 390 412 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 204 223 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 193 203 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 138 159 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 113 132 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 321 343 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 450 474 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 26 489 464 PF00083 none Sugar (and other) transporter IPR005828
SUPERFAMILY 21 485 465 SSF103473 none none IPR020846
Phobius 413 423 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 350 370 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PRINTS 414 426 13 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
PRINTS 33 43 11 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
PRINTS 295 305 11 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
PRINTS 138 157 20 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
PRINTS 391 412 22 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
Phobius 285 309 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 3 501 499 PTHR24063:SF312 none none none
Phobius 160 170 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
TIGRFAM 12 484 473 TIGR00879 "Reactome:REACT_15518" SP: MFS transporter, sugar porter (SP) family IPR003663
Phobius 475 502 28 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 424 444 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSitePatterns 339 356 18 PS00216 none Sugar transport proteins signature 1. IPR005829
Phobius 39 81 43 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 310 320 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

11 Localization

Analysis Start End Length
TMHMM 284 306 22
TMHMM 21 43 22
TMHMM 321 343 22
TMHMM 201 223 22
TMHMM 390 412 22
TMHMM 350 372 22
TMHMM 138 160 22
TMHMM 169 191 22
TMHMM 112 134 22
TMHMM 83 105 22
TMHMM 453 475 22

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting