Protein : Qrob_P0751530.2 Q. robur
Protein Identifier  ? Qrob_P0751530.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) 3.4.24.7 - Interstitial collagenase. Code Enzyme  EC:3.4.24.7
Gene Prediction Quality  validated Protein length 

Sequence

Length: 303  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0004222 metalloendopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO:0006508 proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO:0005509 calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
GO:0031012 extracellular matrix A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals and bacteria) or be part of the cell (as in plants).
GO:0008237 metallopeptidase activity Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103934446 40 298 + 259 Gaps:18 85.31 320 48.35 1e-80 metalloendoproteinase 1-like
blastp_kegg lcl|pxb:103958425 40 298 + 259 Gaps:18 85.31 320 48.35 1e-80 metalloendoproteinase 1-like
blastp_kegg lcl|pxb:103942759 40 298 + 259 Gaps:18 86.12 317 48.35 2e-80 metalloendoproteinase 1-like
blastp_kegg lcl|rcu:RCOM_0852690 40 299 + 260 Gaps:26 86.82 311 48.15 6e-79 Metalloendoproteinase 1 precursor putative (EC:3.4.24.7)
blastp_kegg lcl|pmum:103330192 40 299 + 260 Gaps:24 85.99 314 46.30 1e-78 metalloendoproteinase 1-like
blastp_kegg lcl|tcc:TCM_044196 5 299 + 295 Gaps:31 99.68 311 46.45 3e-78 Matrixin family protein
blastp_kegg lcl|tcc:TCM_046068 5 299 + 295 Gaps:31 99.68 311 46.45 3e-78 Matrixin family protein
blastp_kegg lcl|pper:PRUPE_ppa022514mg 40 299 + 260 Gaps:11 84.12 296 49.40 4e-78 hypothetical protein
blastp_kegg lcl|vvi:100257851 40 299 + 260 Gaps:28 86.35 315 47.43 2e-77 metalloendoproteinase 1-like
blastp_kegg lcl|tcc:TCM_044201 5 299 + 295 Gaps:31 99.68 311 45.48 7e-77 Matrixin family protein
blastp_pdb 1su3_B 58 298 + 241 Gaps:22 50.44 450 39.65 4e-36 mol:protein length:450 Interstitial collagenase
blastp_pdb 1su3_A 58 298 + 241 Gaps:22 50.44 450 39.65 4e-36 mol:protein length:450 Interstitial collagenase
blastp_pdb 1slm_A 58 301 + 244 Gaps:21 91.37 255 38.20 6e-33 mol:protein length:255 STROMELYSIN-1
blastp_pdb 1bzs_A 132 300 + 169 Gaps:12 100.00 165 38.79 9e-25 mol:protein length:165 NEUTROPHIL COLLAGENASE
blastp_pdb 1kbc_B 132 298 + 167 Gaps:12 99.39 164 38.65 4e-24 mol:protein length:164 NEUTROPHIL COLLAGENASE
blastp_pdb 1kbc_A 132 298 + 167 Gaps:12 99.39 164 38.65 4e-24 mol:protein length:164 NEUTROPHIL COLLAGENASE
blastp_pdb 1jan_A 132 298 + 167 Gaps:12 99.39 164 38.65 4e-24 mol:protein length:164 MATRIX METALLO PROTEINASE-8 (PHE79 FORM)
blastp_pdb 3dpf_B 136 298 + 163 Gaps:12 97.55 163 38.99 7e-24 mol:protein length:163 Neutrophil collagenase
blastp_pdb 3dpf_A 136 298 + 163 Gaps:12 97.55 163 38.99 7e-24 mol:protein length:163 Neutrophil collagenase
blastp_pdb 3dpe_A 136 298 + 163 Gaps:12 97.55 163 38.99 7e-24 mol:protein length:163 Neutrophil collagenase
blastp_uniprot_sprot sp|P29136|MEP1_SOYBN 49 298 + 250 Gaps:18 83.28 305 45.28 2e-58 Metalloendoproteinase 1 OS Glycine max PE 1 SV 2
blastp_uniprot_sprot sp|P03956|MMP1_HUMAN 58 298 + 241 Gaps:22 48.40 469 39.65 2e-35 Interstitial collagenase OS Homo sapiens GN MMP1 PE 1 SV 3
blastp_uniprot_sprot sp|P21692|MMP1_PIG 53 298 + 246 Gaps:22 49.47 469 39.66 2e-34 Interstitial collagenase OS Sus scrofa GN MMP1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9XSZ5|MMP1_HORSE 51 298 + 248 Gaps:24 49.89 469 38.46 1e-33 Interstitial collagenase OS Equus caballus GN MMP1 PE 2 SV 1
blastp_uniprot_sprot sp|P13943|MMP1_RABIT 53 298 + 246 Gaps:22 49.57 468 39.22 2e-33 Interstitial collagenase OS Oryctolagus cuniculus GN MMP1 PE 2 SV 1
blastp_uniprot_sprot sp|P03957|MMP3_RAT 54 302 + 249 Gaps:21 50.11 475 36.13 5e-33 Stromelysin-1 OS Rattus norvegicus GN Mmp3 PE 1 SV 1
blastp_uniprot_sprot sp|P28862|MMP3_MOUSE 54 302 + 249 Gaps:21 49.90 477 35.71 1e-32 Stromelysin-1 OS Mus musculus GN Mmp3 PE 2 SV 2
blastp_uniprot_sprot sp|P57748|MMP20_MOUSE 89 298 + 210 Gaps:19 41.29 482 39.70 1e-32 Matrix metalloproteinase-20 OS Mus musculus GN Mmp20 PE 2 SV 1
blastp_uniprot_sprot sp|P22894|MMP8_HUMAN 51 298 + 248 Gaps:24 50.54 467 37.71 1e-32 Neutrophil collagenase OS Homo sapiens GN MMP8 PE 1 SV 1
blastp_uniprot_sprot sp|P28053|MMP1_BOVIN 53 298 + 246 Gaps:20 49.47 469 37.07 1e-32 Interstitial collagenase OS Bos taurus GN MMP1 PE 1 SV 1

21 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 10 10 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
PRINTS 193 221 29 PR00138 none Matrixin signature IPR021190
PRINTS 252 277 26 PR00138 none Matrixin signature IPR021190
PRINTS 112 125 14 PR00138 none Matrixin signature IPR021190
PRINTS 286 299 14 PR00138 none Matrixin signature IPR021190
PRINTS 169 184 16 PR00138 none Matrixin signature IPR021190
PANTHER 1 298 298 PTHR10201 none none none
PANTHER 1 298 298 PTHR10201:SF116 none none none
SUPERFAMILY 134 299 166 SSF55486 none none none
PIRSF 11 302 292 PIRSF001191 none none IPR016293
SUPERFAMILY 48 122 75 SSF47090 none none IPR002477
Gene3D 54 114 61 G3DSA:1.10.101.10 none none IPR002477
ProSitePatterns 115 122 8 PS00546 none Matrixins cysteine switch. IPR021158
Phobius 11 22 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 31 302 272 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 23 30 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
SMART 137 300 164 SM00235 none Zinc-dependent metalloprotease IPR006026
Phobius 1 30 30 SIGNAL_PEPTIDE none Signal peptide region none
Pfam 54 112 59 PF01471 none Putative peptidoglycan binding domain IPR002477
Gene3D 115 299 185 G3DSA:3.40.390.10 none none IPR024079
Pfam 145 298 154 PF00413 none Matrixin IPR001818

1 Localization

Analysis Start End Length
SignalP_EUK 1 30 29

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5

0 Targeting