Protein : Qrob_P0710400.2 Q. robur
Protein Identifier  ? Qrob_P0710400.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR11717 - LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE Gene Prediction Quality  validated
Protein length 

Sequence

Length: 178  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0004045 aminoacyl-tRNA hydrolase activity Catalysis of the reaction: N-substituted aminoacyl-tRNA + H2O = N-substituted amino acid + tRNA.

16 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103320103 1 177 + 177 Gaps:10 100.00 185 70.81 1e-84 putative peptidyl-tRNA hydrolase PTRHD1
blastp_kegg lcl|pop:POPTR_0018s03500g 1 177 + 177 Gaps:18 100.00 187 68.45 1e-81 POPTRDRAFT_809187 hypothetical protein
blastp_kegg lcl|mdm:103428822 1 177 + 177 Gaps:7 100.00 176 70.45 2e-81 putative peptidyl-tRNA hydrolase PTRHD1
blastp_kegg lcl|mdm:103456092 1 177 + 177 Gaps:7 100.00 176 72.16 4e-81 putative peptidyl-tRNA hydrolase PTRHD1
blastp_kegg lcl|pxb:103957541 1 177 + 177 Gaps:9 100.00 178 71.91 7e-81 putative peptidyl-tRNA hydrolase PTRHD1
blastp_kegg lcl|pxb:103940122 1 177 + 177 Gaps:7 100.00 176 71.02 9e-81 putative peptidyl-tRNA hydrolase PTRHD1
blastp_kegg lcl|pper:PRUPE_ppa013172mg 42 177 + 136 none 100.00 136 83.82 4e-80 hypothetical protein
blastp_kegg lcl|tcc:TCM_036828 46 177 + 132 none 69.47 190 84.09 8e-78 Peptidyl-tRNA hydrolase II family protein
blastp_kegg lcl|cam:101495672 16 177 + 162 Gaps:10 88.54 192 72.94 1e-77 putative peptidyl-tRNA hydrolase PTRHD1-like
blastp_kegg lcl|pvu:PHAVU_009G101700g 12 177 + 166 Gaps:17 96.83 189 66.12 8e-77 hypothetical protein
blastp_uniprot_sprot sp|Q3SZ85|PTRD1_BOVIN 61 177 + 117 Gaps:5 84.29 140 49.15 1e-27 Putative peptidyl-tRNA hydrolase PTRHD1 OS Bos taurus GN PTRHD1 PE 2 SV 2
blastp_uniprot_sprot sp|Q6GMV3|PTRD1_HUMAN 61 177 + 117 Gaps:5 84.29 140 47.46 1e-25 Putative peptidyl-tRNA hydrolase PTRHD1 OS Homo sapiens GN PTRHD1 PE 1 SV 1
blastp_uniprot_sprot sp|D3Z4S3|PTRD1_MOUSE 61 177 + 117 Gaps:5 84.29 140 46.61 8e-25 Putative peptidyl-tRNA hydrolase PTRHD1 OS Mus musculus GN Ptrhd1 PE 3 SV 1
rpsblast_cdd gnl|CDD|48404 63 176 + 114 Gaps:2 100.00 116 57.76 5e-45 cd02429 PTH2_like Peptidyl-tRNA hydrolase type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup..
rpsblast_cdd gnl|CDD|48403 63 176 + 114 Gaps:9 100.00 115 31.30 1e-29 cd02407 PTH2_family Peptidyl-tRNA hydrolase type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes..
rpsblast_kog gnl|CDD|38515 61 177 + 117 Gaps:2 98.35 121 66.39 9e-51 KOG3305 KOG3305 KOG3305 Uncharacterized conserved protein [Function unknown].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 13 177 165 PTHR11717 none none none
PANTHER 13 177 165 PTHR11717:SF2 none none none
SUPERFAMILY 63 176 114 SSF102462 none none IPR023476
Gene3D 64 176 113 G3DSA:3.40.1490.10 none none IPR023476
Pfam 64 175 112 PF01981 none Peptidyl-tRNA hydrolase PTH2 IPR002833

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

0 Targeting