Protein : Qrob_P0672460.2 Q. robur
Protein Identifier  ? Qrob_P0672460.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) 3.4.24.23 - Matrilysin. Code Enzyme  EC:3.4.24.23
Gene Prediction Quality  validated Protein length 

Sequence

Length: 302  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0004222 metalloendopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO:0006508 proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO:0031012 extracellular matrix A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals and bacteria) or be part of the cell (as in plants).
GO:0008237 metallopeptidase activity Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa022514mg 35 301 + 267 Gaps:15 85.14 296 51.19 2e-77 hypothetical protein
blastp_kegg lcl|pmum:103330192 35 301 + 267 Gaps:28 86.94 314 47.99 6e-77 metalloendoproteinase 1-like
blastp_kegg lcl|pop:POPTR_0013s03350g 1 301 + 301 Gaps:27 100.00 312 44.55 3e-76 POPTRDRAFT_241047 hypothetical protein
blastp_kegg lcl|pxb:103934446 46 299 + 254 Gaps:21 83.44 320 48.31 5e-75 metalloendoproteinase 1-like
blastp_kegg lcl|pxb:103958425 46 299 + 254 Gaps:21 83.44 320 48.31 5e-75 metalloendoproteinase 1-like
blastp_kegg lcl|pop:POPTR_0013s10410g 10 299 + 290 Gaps:19 98.36 304 45.15 5e-75 hypothetical protein
blastp_kegg lcl|pxb:103942759 46 299 + 254 Gaps:21 84.23 317 48.31 8e-75 metalloendoproteinase 1-like
blastp_kegg lcl|pper:PRUPE_ppb025548mg 1 299 + 299 Gaps:24 98.10 315 44.66 2e-74 hypothetical protein
blastp_kegg lcl|tcc:TCM_044196 1 300 + 300 Gaps:34 99.68 311 46.13 1e-73 Matrixin family protein
blastp_kegg lcl|tcc:TCM_046068 1 300 + 300 Gaps:34 99.68 311 46.13 1e-73 Matrixin family protein
blastp_pdb 1su3_B 43 299 + 257 Gaps:27 52.89 450 41.60 2e-38 mol:protein length:450 Interstitial collagenase
blastp_pdb 1su3_A 43 299 + 257 Gaps:27 52.89 450 41.60 2e-38 mol:protein length:450 Interstitial collagenase
blastp_pdb 1slm_A 58 299 + 242 Gaps:24 90.20 255 41.30 7e-36 mol:protein length:255 STROMELYSIN-1
blastp_pdb 2k2g_A 135 300 + 166 Gaps:10 99.39 165 40.85 5e-28 mol:protein length:165 Macrophage metalloelastase
blastp_pdb 2z2d_A 135 300 + 166 Gaps:10 100.00 164 40.85 7e-28 mol:protein length:164 Macrophage metalloelastase
blastp_pdb 1jiz_B 135 300 + 166 Gaps:10 98.80 166 40.85 7e-28 mol:protein length:166 macrophage elastase MMP-12
blastp_pdb 1jiz_A 135 300 + 166 Gaps:10 98.80 166 40.85 7e-28 mol:protein length:166 macrophage elastase MMP-12
blastp_pdb 2ddy_A 132 299 + 168 Gaps:16 94.80 173 42.07 3e-27 mol:protein length:173 Matrilysin
blastp_pdb 1mmr_A 132 299 + 168 Gaps:16 96.47 170 42.07 4e-27 mol:protein length:170 MATRILYSIN
blastp_pdb 1mmq_A 132 299 + 168 Gaps:16 96.47 170 42.07 4e-27 mol:protein length:170 MATRILYSIN
blastp_uniprot_sprot sp|P29136|MEP1_SOYBN 47 299 + 253 Gaps:15 83.93 305 43.75 8e-56 Metalloendoproteinase 1 OS Glycine max PE 1 SV 2
blastp_uniprot_sprot sp|P57748|MMP20_MOUSE 89 299 + 211 Gaps:20 41.29 482 43.72 6e-40 Matrix metalloproteinase-20 OS Mus musculus GN Mmp20 PE 2 SV 1
blastp_uniprot_sprot sp|P09237|MMP7_HUMAN 57 299 + 243 Gaps:30 84.27 267 40.44 2e-38 Matrilysin OS Homo sapiens GN MMP7 PE 1 SV 1
blastp_uniprot_sprot sp|P03956|MMP1_HUMAN 37 299 + 263 Gaps:27 52.03 469 41.39 2e-38 Interstitial collagenase OS Homo sapiens GN MMP1 PE 1 SV 3
blastp_uniprot_sprot sp|O60882|MMP20_HUMAN 35 299 + 265 Gaps:22 52.38 483 39.13 2e-38 Matrix metalloproteinase-20 OS Homo sapiens GN MMP20 PE 1 SV 3
blastp_uniprot_sprot sp|O18767|MMP20_BOVIN 89 299 + 211 Gaps:20 41.37 481 43.72 2e-37 Matrix metalloproteinase-20 OS Bos taurus GN MMP20 PE 1 SV 1
blastp_uniprot_sprot sp|Q10835|MMP13_XENLA 43 299 + 257 Gaps:38 52.24 469 39.59 2e-37 Collagenase 3 (Fragment) OS Xenopus laevis GN mmp13 PE 2 SV 1
blastp_uniprot_sprot sp|P39900|MMP12_HUMAN 85 299 + 215 Gaps:20 43.19 470 42.36 4e-37 Macrophage metalloelastase OS Homo sapiens GN MMP12 PE 1 SV 1
blastp_uniprot_sprot sp|P21692|MMP1_PIG 45 299 + 255 Gaps:27 50.32 469 41.95 4e-37 Interstitial collagenase OS Sus scrofa GN MMP1 PE 1 SV 2
blastp_uniprot_sprot sp|P79287|MMP20_PIG 89 299 + 211 Gaps:20 41.20 483 43.72 5e-37 Matrix metalloproteinase-20 OS Sus scrofa GN MMP20 PE 2 SV 1

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 30 30 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 1 10 10 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
PRINTS 287 300 14 PR00138 none Matrixin signature IPR021190
PRINTS 169 184 16 PR00138 none Matrixin signature IPR021190
PRINTS 112 125 14 PR00138 none Matrixin signature IPR021190
PRINTS 253 278 26 PR00138 none Matrixin signature IPR021190
PRINTS 193 221 29 PR00138 none Matrixin signature IPR021190
Pfam 145 299 155 PF00413 none Matrixin IPR001818
Gene3D 49 300 252 G3DSA:3.40.390.10 none none IPR024079
Phobius 31 301 271 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 54 112 59 PF01471 none Putative peptidoglycan binding domain IPR002477
Phobius 11 22 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SUPERFAMILY 49 122 74 SSF47090 none none IPR002477
SMART 137 301 165 SM00235 none Zinc-dependent metalloprotease IPR006026
Phobius 23 30 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PANTHER 13 299 287 PTHR10201 none none none
SUPERFAMILY 134 299 166 SSF55486 none none none

3 Localization

Analysis Start End Length
SignalP_GRAM_NEGATIVE 1 26 25
SignalP_GRAM_POSITIVE 1 30 29
SignalP_EUK 1 24 23

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5

0 Targeting