Protein : Qrob_P0536480.2 Q. robur
Protein Identifier  ? Qrob_P0536480.2 Organism . Name  Quercus robur
Score  94.6 Score Type  egn
Protein Description  (M=5) K14376 - poly(A) polymerase [EC:2.7.7.19] Code Enzyme  EC:2.7.7.19
Gene Prediction Quality  validated Protein length 

Sequence

Length: 702  
Kegg Orthology  K14376
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0016779 nucleotidyltransferase activity Catalysis of the transfer of a nucleotidyl group to a reactant.
GO:0004652 polynucleotide adenylyltransferase activity Catalysis of the template-independent extension of the 3'- end of an RNA or DNA strand by addition of one adenosine molecule at a time. Cannot initiate a chain 'de novo'. The primer, depending on the source of the enzyme, may be an RNA or DNA fragment, or oligo(A) bearing a 3'-OH terminal group.
GO:0043631 RNA polyadenylation The enzymatic addition of a sequence of adenylyl residues at the 3' end of an RNA molecule.
GO:0031123 RNA 3'-end processing Any process involved in forming the mature 3' end of an RNA molecule.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100252483 16 556 + 541 none 92.16 587 66.91 0.0 poly(A) polymerase-like
blastp_kegg lcl|rcu:RCOM_0723820 15 701 + 687 Gaps:59 96.62 770 54.84 0.0 Poly(A) polymerase alpha putative (EC:2.7.7.19)
blastp_kegg lcl|tcc:TCM_012521 15 700 + 686 Gaps:65 97.77 762 53.96 0.0 Poly(A) polymerase 1 isoform 1
blastp_kegg lcl|cit:102606839 15 699 + 685 Gaps:61 98.93 748 54.19 0.0 poly(A) polymerase-like
blastp_kegg lcl|vvi:100268087 15 699 + 685 Gaps:65 97.49 757 55.15 0.0 poly(A) polymerase-like
blastp_kegg lcl|mtr:MTR_6g082000 1 699 + 699 Gaps:50 99.34 752 53.15 0.0 Poly(A) polymerase
blastp_kegg lcl|cam:101514104 1 699 + 699 Gaps:55 99.34 753 53.21 0.0 poly(A) polymerase-like
blastp_kegg lcl|pper:PRUPE_ppa001856mg 15 700 + 686 Gaps:58 97.75 755 54.34 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0015s04100g 15 699 + 685 Gaps:73 97.18 780 52.90 0.0 POPTRDRAFT_251405 hypothetical protein
blastp_kegg lcl|sot:102594846 17 696 + 680 Gaps:52 98.13 695 56.74 0.0 poly(A) polymerase-like
blastp_pdb 1f5a_A 12 502 + 491 Gaps:13 96.69 513 43.15 9e-124 mol:protein length:513 POLY(A) POLYMERASE
blastp_pdb 1q79_A 12 502 + 491 Gaps:13 96.50 514 43.15 1e-123 mol:protein length:514 Poly(A) polymerase alpha
blastp_pdb 1q78_A 12 502 + 491 Gaps:13 96.50 514 43.15 1e-123 mol:protein length:514 Poly(A) polymerase alpha
blastp_pdb 2hhp_A 17 414 + 398 Gaps:7 74.91 530 44.84 1e-108 mol:protein length:530 Poly(A) polymerase
blastp_pdb 3c66_B 17 414 + 398 Gaps:7 73.93 537 44.84 2e-108 mol:protein length:537 Poly(A) polymerase
blastp_pdb 3c66_A 17 414 + 398 Gaps:7 73.93 537 44.84 2e-108 mol:protein length:537 Poly(A) polymerase
blastp_pdb 1fa0_B 17 414 + 398 Gaps:7 73.93 537 44.84 2e-108 mol:protein length:537 POLY(A)-POLYMERASE
blastp_pdb 1fa0_A 17 414 + 398 Gaps:7 73.93 537 44.84 2e-108 mol:protein length:537 POLY(A)-POLYMERASE
blastp_pdb 2o1p_B 17 414 + 398 Gaps:7 72.71 546 44.84 3e-108 mol:protein length:546 Poly(A) polymerase
blastp_pdb 2o1p_A 17 414 + 398 Gaps:7 72.71 546 44.84 3e-108 mol:protein length:546 Poly(A) polymerase
blastp_uniprot_sprot sp|Q54J73|PAP_DICDI 13 487 + 475 Gaps:16 59.46 809 46.99 5e-144 Poly(A) polymerase OS Dictyostelium discoideum GN papA PE 3 SV 1
blastp_uniprot_sprot sp|Q9BWT3|PAPOG_HUMAN 17 609 + 593 Gaps:28 79.48 736 38.80 2e-123 Poly(A) polymerase gamma OS Homo sapiens GN PAPOLG PE 1 SV 2
blastp_uniprot_sprot sp|Q61183|PAPOA_MOUSE 12 502 + 491 Gaps:14 67.25 739 43.46 3e-123 Poly(A) polymerase alpha OS Mus musculus GN Papola PE 1 SV 4
blastp_uniprot_sprot sp|P51003|PAPOA_HUMAN 12 543 + 532 Gaps:18 71.41 745 41.35 9e-123 Poly(A) polymerase alpha OS Homo sapiens GN PAPOLA PE 1 SV 4
blastp_uniprot_sprot sp|P25500|PAPOA_BOVIN 12 502 + 491 Gaps:13 67.12 739 43.15 2e-122 Poly(A) polymerase alpha OS Bos taurus GN PAPOLA PE 1 SV 3
blastp_uniprot_sprot sp|Q6PCL9|PAPOG_MOUSE 17 609 + 593 Gaps:23 79.57 739 38.27 7e-122 Poly(A) polymerase gamma OS Mus musculus GN Papolg PE 1 SV 1
blastp_uniprot_sprot sp|Q10295|PAP_SCHPO 17 403 + 387 Gaps:1 68.20 566 47.67 4e-120 Poly(A) polymerase pla1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN pla1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9WVP6|PAPOB_MOUSE 8 483 + 476 Gaps:15 75.35 641 43.27 9e-120 Poly(A) polymerase beta OS Mus musculus GN Papolb PE 1 SV 2
blastp_uniprot_sprot sp|Q9NRJ5|PAPOB_HUMAN 15 483 + 469 Gaps:14 74.69 636 44.00 1e-118 Poly(A) polymerase beta OS Homo sapiens GN PAPOLB PE 2 SV 1
blastp_uniprot_sprot sp|P51004|PAPO1_XENLA 13 502 + 490 Gaps:15 68.95 715 41.58 1e-117 Poly(A) polymerase alpha-A (Fragment) OS Xenopus laevis GN papola-a PE 2 SV 1

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 12 537 526 PTHR10682:SF22 none none none
Gene3D 422 488 67 G3DSA:3.30.70.590 none none IPR007010
Gene3D 364 418 55 G3DSA:3.30.70.590 none none IPR007010
Phobius 1 232 232 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 15 361 347 PF04928 none Poly(A) polymerase central domain IPR007012
SUPERFAMILY 17 209 193 SSF81301 none none none
Phobius 259 277 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 90 166 77 PF01909 none Nucleotidyltransferase domain IPR002934
SUPERFAMILY 364 489 126 SSF55003 none none IPR011068
Gene3D 157 361 205 G3DSA:1.10.1410.10 none none none
Phobius 298 701 404 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 212 360 149 SSF81631 none none none
Pfam 364 495 132 PF04926 none Poly(A) polymerase predicted RNA binding domain IPR007010
PANTHER 12 537 526 PTHR10682 none none IPR014492
Phobius 233 258 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 278 297 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5

0 Targeting