Protein : Qrob_P0497630.2 Q. robur
Protein Identifier  ? Qrob_P0497630.2 Organism . Name  Quercus robur
Score  36.1 Score Type  egn
Protein Description  (M=4) 5.1.3.6 - UDP-glucuronate 4-epimerase. Code Enzyme  EC:5.1.3.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 439  
Kegg Orthology  K08679
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0050662 coenzyme binding Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed.
GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives Catalysis of a reaction that alters the configuration of one or more chiral centers in a carbohydrate molecule.

47 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|ath:AT4G00110 5 437 + 433 Gaps:5 99.53 430 83.41 0.0 GAE3 UDP-D-glucuronate 4-epimerase 3
blastp_kegg lcl|tcc:TCM_005530 1 438 + 438 Gaps:11 100.00 437 82.15 0.0 UDP-D-glucuronate 4-epimerase 3
blastp_kegg lcl|mdm:103418498 7 438 + 432 Gaps:8 100.00 432 83.10 0.0 UDP-glucuronate 4-epimerase 3
blastp_kegg lcl|pmum:103331771 1 438 + 438 Gaps:11 100.00 435 82.99 0.0 UDP-glucuronate 4-epimerase 3
blastp_kegg lcl|pper:PRUPE_ppa005953mg 1 438 + 438 Gaps:11 100.00 435 82.99 0.0 hypothetical protein
blastp_kegg lcl|aly:ARALYDRAFT_912240 5 437 + 433 Gaps:6 99.53 429 83.37 0.0 GAE2 UDP-D-glucuronate 4-epimerase 2
blastp_kegg lcl|cic:CICLE_v10020187mg 1 438 + 438 Gaps:9 100.00 439 80.18 0.0 hypothetical protein
blastp_kegg lcl|cit:102622732 1 438 + 438 Gaps:9 100.00 439 80.18 0.0 UDP-glucuronate 4-epimerase 3-like
blastp_kegg lcl|ath:AT1G02000 7 435 + 429 Gaps:11 98.62 434 83.18 0.0 GAE2 UDP-D-glucuronate 4-epimerase 2
blastp_kegg lcl|pxb:103934729 1 438 + 438 Gaps:8 100.00 438 82.19 0.0 UDP-glucuronate 4-epimerase 3
blastp_pdb 3ruf_B 102 429 + 328 Gaps:28 91.17 351 30.00 5e-33 mol:protein length:351 WbgU
blastp_pdb 3rue_B 102 429 + 328 Gaps:28 91.17 351 30.00 5e-33 mol:protein length:351 WbgU
blastp_pdb 3ruh_D 102 429 + 328 Gaps:28 91.17 351 30.00 5e-33 mol:protein length:351 WbgU
blastp_pdb 3ruh_C 102 429 + 328 Gaps:28 91.17 351 30.00 5e-33 mol:protein length:351 WbgU
blastp_pdb 3ruh_B 102 429 + 328 Gaps:28 91.17 351 30.00 5e-33 mol:protein length:351 WbgU
blastp_pdb 3ruh_A 102 429 + 328 Gaps:28 91.17 351 30.00 5e-33 mol:protein length:351 WbgU
blastp_pdb 3ruf_b 102 429 + 328 Gaps:28 91.17 351 30.00 5e-33 mol:protein length:351 WbgU
blastp_pdb 3ruf_S 102 429 + 328 Gaps:28 91.17 351 30.00 5e-33 mol:protein length:351 WbgU
blastp_pdb 3ruf_A 102 429 + 328 Gaps:28 91.17 351 30.00 5e-33 mol:protein length:351 WbgU
blastp_pdb 3rue_b 102 429 + 328 Gaps:28 91.17 351 30.00 5e-33 mol:protein length:351 WbgU
blastp_uniprot_sprot sp|O81312|GAE3_ARATH 5 437 + 433 Gaps:5 99.53 430 83.41 0.0 UDP-glucuronate 4-epimerase 3 OS Arabidopsis thaliana GN GAE3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LPC1|GAE2_ARATH 7 435 + 429 Gaps:11 98.62 434 83.18 0.0 UDP-glucuronate 4-epimerase 2 OS Arabidopsis thaliana GN GAE2 PE 2 SV 1
blastp_uniprot_sprot sp|O22141|GAE4_ARATH 7 438 + 432 Gaps:8 99.77 437 77.98 0.0 UDP-glucuronate 4-epimerase 4 OS Arabidopsis thaliana GN GAE4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9STI6|GAE5_ARATH 7 437 + 431 Gaps:21 99.54 436 73.73 0.0 UDP-glucuronate 4-epimerase 5 OS Arabidopsis thaliana GN GAE5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M0B6|GAE1_ARATH 7 436 + 430 Gaps:9 99.07 429 69.41 0.0 UDP-glucuronate 4-epimerase 1 OS Arabidopsis thaliana GN GAE1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LIS3|GAE6_ARATH 78 430 + 353 Gaps:1 76.52 460 76.42 0.0 UDP-glucuronate 4-epimerase 6 OS Arabidopsis thaliana GN GAE6 PE 1 SV 1
blastp_uniprot_sprot sp|Q04871|YCL2_ECO11 99 430 + 332 Gaps:10 99.40 334 48.80 4e-97 Uncharacterized 37.6 kDa protein in cld 5'region OS Escherichia coli O111:H- PE 3 SV 1
blastp_uniprot_sprot sp|P39858|CAPI_STAAU 99 430 + 332 Gaps:10 99.40 334 46.69 2e-95 Protein CapI OS Staphylococcus aureus GN capI PE 3 SV 1
blastp_uniprot_sprot sp|Q58455|Y1055_METJA 100 427 + 328 Gaps:21 96.01 326 45.69 3e-85 Uncharacterized protein MJ1055 OS Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN MJ1055 PE 3 SV 1
blastp_uniprot_sprot sp|O54067|LPSL_RHIME 99 430 + 332 Gaps:12 97.95 341 44.01 4e-84 UDP-glucuronate 5'-epimerase OS Rhizobium meliloti (strain 1021) GN lspL PE 3 SV 2

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 99 292 194 G3DSA:3.40.50.720 none none IPR016040
Pfam 101 337 237 PF01370 none NAD dependent epimerase/dehydratase family IPR001509
PANTHER 95 435 341 PTHR10366:SF319 none none none
Phobius 39 56 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 95 435 341 PTHR10366 none none none
Phobius 1 38 38 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 57 438 382 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 97 430 334 SSF51735 none none none
PRINTS 317 332 16 PR01713 none Nucleotide sugar epimerase signature IPR008089
PRINTS 352 367 16 PR01713 none Nucleotide sugar epimerase signature IPR008089
PRINTS 392 409 18 PR01713 none Nucleotide sugar epimerase signature IPR008089
PRINTS 127 143 17 PR01713 none Nucleotide sugar epimerase signature IPR008089
Gene3D 293 434 142 G3DSA:3.90.25.10 none none none

1 Localization

Analysis Start End Length
TMHMM 34 56 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting