Protein : Qrob_P0453320.2 Q. robur
Protein Identifier  ? Qrob_P0453320.2 Organism . Name  Quercus robur
Score  91.1 Score Type  egn
Protein Description  (M=18) K04567 - lysyl-tRNA synthetase, class II [EC:6.1.1.6] Code Enzyme  EC:6.1.1.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 605  
Kegg Orthology  K04567
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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004812 aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO:0006418 tRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO:0004824 lysine-tRNA ligase activity Catalysis of the reaction: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys).
GO:0006430 lysyl-tRNA aminoacylation The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

45 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100262532 4 553 + 550 Gaps:8 89.82 619 81.47 0.0 lysyl-tRNA synthetase-like
blastp_kegg lcl|vvi:100242505 4 552 + 549 Gaps:8 89.52 620 81.26 0.0 lysyl-tRNA synthetase-like
blastp_kegg lcl|tcc:TCM_019889 10 553 + 544 Gaps:11 89.23 613 81.54 0.0 Lysyl-tRNA synthetase 1 isoform 1
blastp_kegg lcl|pmum:103323536 3 555 + 553 Gaps:10 91.40 616 78.69 0.0 lysine--tRNA ligase
blastp_kegg lcl|cmo:103492812 11 552 + 542 Gaps:8 79.54 689 81.57 0.0 lysine--tRNA ligase
blastp_kegg lcl|pmum:103323559 3 560 + 558 Gaps:11 85.91 660 78.31 0.0 lysine--tRNA ligase-like
blastp_kegg lcl|pper:PRUPE_ppa016996mg 1 560 + 560 Gaps:11 97.26 585 78.21 0.0 hypothetical protein
blastp_kegg lcl|csv:101204394 11 552 + 542 Gaps:8 79.19 692 79.93 0.0 lysine--tRNA ligase-like
blastp_kegg lcl|pper:PRUPE_ppa003157mg 8 555 + 548 Gaps:10 93.47 597 78.49 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0435350 12 555 + 544 Gaps:10 90.28 607 79.56 0.0 lysyl-tRNA synthetase putative (EC:6.1.1.6)
blastp_pdb 3bju_D 23 549 + 527 Gaps:37 97.50 521 60.04 0.0 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_C 23 549 + 527 Gaps:37 97.50 521 60.04 0.0 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_B 23 549 + 527 Gaps:37 97.50 521 60.04 0.0 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_A 23 549 + 527 Gaps:37 97.50 521 60.04 0.0 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3e9i_D 43 545 + 503 Gaps:50 95.13 493 46.06 2e-127 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_C 43 545 + 503 Gaps:50 95.13 493 46.06 2e-127 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_B 43 545 + 503 Gaps:50 95.13 493 46.06 2e-127 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_A 43 545 + 503 Gaps:50 95.13 493 46.06 2e-127 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9h_D 43 545 + 503 Gaps:50 95.13 493 46.06 2e-127 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9h_C 43 545 + 503 Gaps:50 95.13 493 46.06 2e-127 mol:protein length:493 Lysyl-tRNA synthetase
blastp_uniprot_sprot sp|Q9ZPI1|SYK_ARATH 3 552 + 550 Gaps:13 88.02 626 76.04 0.0 Lysine--tRNA ligase OS Arabidopsis thaliana GN At3g11710 PE 2 SV 1
blastp_uniprot_sprot sp|Q6F2U9|SYK_ORYSJ 14 548 + 535 Gaps:18 88.87 602 75.70 0.0 Lysine--tRNA ligase OS Oryza sativa subsp. japonica GN Os03g0586800 PE 2 SV 1
blastp_uniprot_sprot sp|Q43776|SYK_SOLLC 3 547 + 545 Gaps:14 94.73 588 63.20 0.0 Lysine--tRNA ligase OS Solanum lycopersicum GN LYSRS PE 2 SV 1
blastp_uniprot_sprot sp|Q99MN1|SYK_MOUSE 3 555 + 553 Gaps:37 89.75 595 59.55 0.0 Lysine--tRNA ligase OS Mus musculus GN Kars PE 1 SV 1
blastp_uniprot_sprot sp|P37879|SYK_CRIGR 15 549 + 535 Gaps:37 86.43 597 60.27 0.0 Lysine--tRNA ligase OS Cricetulus griseus GN KARS PE 1 SV 1
blastp_uniprot_sprot sp|Q15046|SYK_HUMAN 15 549 + 535 Gaps:37 86.43 597 59.30 0.0 Lysine--tRNA ligase OS Homo sapiens GN KARS PE 1 SV 3
blastp_uniprot_sprot sp|Q9UUE6|SYKC_SCHPO 14 547 + 534 Gaps:48 87.99 591 56.35 0.0 Lysine--tRNA ligase cytoplasmic OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN krs1 PE 3 SV 1
blastp_uniprot_sprot sp|Q22099|SYK_CAEEL 24 548 + 525 Gaps:39 88.46 572 56.72 0.0 Lysine--tRNA ligase OS Caenorhabditis elegans GN krs-1 PE 3 SV 1
blastp_uniprot_sprot sp|P15180|SYKC_YEAST 22 546 + 525 Gaps:45 86.63 591 55.66 0.0 Lysine--tRNA ligase cytoplasmic OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN KRS1 PE 1 SV 2
blastp_uniprot_sprot sp|Q8SS56|SYKC_ENCCU 43 547 + 505 Gaps:44 94.31 510 54.05 1e-170 Probable lysine--tRNA ligase cytoplasmic OS Encephalitozoon cuniculi (strain GB-M1) GN ECU04_0580 PE 3 SV 2

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PIRSF 2 558 557 PIRSF039101 "KEGG:00970+6.1.1.6" none IPR002313
Gene3D 200 543 344 G3DSA:3.30.930.10 none none none
Pfam 78 157 80 PF01336 none OB-fold nucleic acid binding domain IPR004365
SUPERFAMILY 23 168 146 SSF50249 none none IPR012340
PANTHER 3 552 550 PTHR22594:SF4 none none none
PANTHER 3 552 550 PTHR22594 "Reactome:REACT_71";signature_desc=ASPARTYL/LYSYL-TRNA SYNTHETASE none IPR018150
Hamap 31 549 519 MF_00252 "KEGG:00970+6.1.1.6" Lysine--tRNA ligase [lysS]. IPR002313
Pfam 202 545 344 PF00152 "Reactome:REACT_71" tRNA synthetases class II (D, K and N) IPR004364
TIGRFAM 194 547 354 TIGR00499 "KEGG:00970+6.1.1.6" lysS_bact: lysine--tRNA ligase IPR002313
ProSiteProfiles 224 546 323 PS50862 "Reactome:REACT_71" Aminoacyl-transfer RNA synthetases class-II family profile. IPR006195
PRINTS 239 249 11 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 429 445 17 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 284 297 14 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 255 271 17 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 302 319 18 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
Gene3D 26 168 143 G3DSA:2.40.50.140 none none IPR012340
SUPERFAMILY 202 545 344 SSF55681 none none none

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting