Protein : Qrob_P0446640.2 Q. robur
Protein Identifier  ? Qrob_P0446640.2 Organism . Name  Quercus robur
Score  89.0 Score Type  egn
Protein Description  (M=1) PTHR11240:SF16 - RIBONUCLEASE T2 FAMILY PROTEIN Code Enzyme  EC:3.1.27.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 272  
Kegg Orthology  K01166
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0033897 ribonuclease T2 activity Catalysis of the two-stage endonucleolytic cleavage to nucleoside 3'-phosphates and 3'-phosphooligonucleotides with 2',3'-cyclic phosphate intermediates.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0014s17280g 7 268 + 262 Gaps:11 95.15 268 75.29 9e-135 POPTRDRAFT_1100159 hypothetical protein
blastp_kegg lcl|mdm:103445320 41 268 + 228 Gaps:2 84.25 273 78.70 1e-133 ribonuclease 2-like
blastp_kegg lcl|pxb:103949539 6 268 + 263 Gaps:2 96.72 274 69.06 2e-132 ribonuclease 2
blastp_kegg lcl|pmum:103334659 18 268 + 251 Gaps:10 92.23 283 69.35 3e-132 ribonuclease 2
blastp_kegg lcl|pper:PRUPE_ppa009963mg 18 268 + 251 Gaps:10 96.67 270 69.35 2e-131 hypothetical protein
blastp_kegg lcl|cam:101515174 33 271 + 239 Gaps:2 88.60 272 72.61 3e-129 ribonuclease 2-like
blastp_kegg lcl|rcu:RCOM_1212030 5 264 + 260 Gaps:15 97.68 259 72.73 6e-128 ribonuclease t2 putative (EC:3.1.27.1)
blastp_kegg lcl|mdm:103436032 6 268 + 263 Gaps:2 96.72 274 69.06 1e-127 ribonuclease 2-like
blastp_kegg lcl|fve:101313370 24 268 + 245 Gaps:8 91.34 277 69.96 1e-125 ribonuclease 2-like
blastp_kegg lcl|gmx:100789614 41 270 + 230 Gaps:2 85.61 271 69.83 2e-120 ribonuclease 2-like
blastp_pdb 1jy5_B 41 253 + 213 Gaps:13 96.23 212 49.51 2e-64 mol:protein length:212 CalsepRRP
blastp_pdb 1jy5_A 41 253 + 213 Gaps:13 96.23 212 49.51 2e-64 mol:protein length:212 CalsepRRP
blastp_pdb 1sgl_A 41 253 + 213 Gaps:17 97.61 209 50.98 1e-60 mol:protein length:209 trichomaglin
blastp_pdb 1vd3_A 42 222 + 181 Gaps:20 81.57 217 40.68 2e-30 mol:protein length:217 RNase NGR3
blastp_pdb 1vd1_A 42 222 + 181 Gaps:20 81.57 217 40.68 2e-30 mol:protein length:217 RNase NGR3
blastp_pdb 1vcz_A 42 222 + 181 Gaps:20 81.57 217 40.68 2e-30 mol:protein length:217 RNase NGR3
blastp_pdb 1dix_A 42 249 + 208 Gaps:24 91.35 208 37.89 8e-29 mol:protein length:208 EXTRACELLULAR RIBONUCLEASE LE
blastp_pdb 1iyb_B 42 209 + 168 Gaps:14 76.92 208 38.75 2e-27 mol:protein length:208 Ribonuclease
blastp_pdb 1iyb_A 42 209 + 168 Gaps:14 76.92 208 38.75 2e-27 mol:protein length:208 Ribonuclease
blastp_pdb 1iqq_A 44 201 + 158 Gaps:25 71.50 200 36.36 2e-13 mol:protein length:200 S3-RNase
blastp_uniprot_sprot sp|P42814|RNS2_ARATH 15 269 + 255 Gaps:14 94.59 259 66.94 9e-115 Ribonuclease 2 OS Arabidopsis thaliana GN RNS2 PE 2 SV 1
blastp_uniprot_sprot sp|P80196|RNLX_SOLLC 40 212 + 173 Gaps:15 69.20 237 43.90 1e-32 Intracellular ribonuclease LX OS Solanum lycopersicum GN RNALX PE 1 SV 2
blastp_uniprot_sprot sp|P42813|RNS1_ARATH 12 210 + 199 Gaps:17 81.74 230 39.89 9e-31 Ribonuclease 1 OS Arabidopsis thaliana GN RNS1 PE 1 SV 1
blastp_uniprot_sprot sp|Q7M438|RNDI_DICDI 15 223 + 209 Gaps:19 87.89 223 34.69 3e-30 Ribonuclease DdI OS Dictyostelium discoideum GN ddiA PE 1 SV 3
blastp_uniprot_sprot sp|P42815|RNS3_ARATH 32 219 + 188 Gaps:20 83.78 222 38.71 2e-29 Ribonuclease 3 OS Arabidopsis thaliana GN RNS3 PE 2 SV 1
blastp_uniprot_sprot sp|P80022|RNLE_SOLLC 42 249 + 208 Gaps:24 82.61 230 37.89 2e-28 Extracellular ribonuclease LE OS Solanum lycopersicum PE 1 SV 2
blastp_uniprot_sprot sp|Q38717|RNS4_ANTHI 45 219 + 175 Gaps:12 71.67 233 35.93 5e-25 Ribonuclease S-4 OS Antirrhinum hispanicum GN S4 PE 2 SV 1
blastp_uniprot_sprot sp|Q40381|RNS7_NICAL 44 220 + 177 Gaps:17 77.06 218 38.10 2e-22 Ribonuclease S-7 OS Nicotiana alata PE 1 SV 1
blastp_uniprot_sprot sp|Q7M456|RNOY_CRAGI 42 247 + 206 Gaps:47 93.43 213 34.67 3e-22 Ribonuclease Oy OS Crassostrea gigas PE 1 SV 1
blastp_uniprot_sprot sp|P81477|RNPB_PHYPO 44 250 + 207 Gaps:40 95.00 180 38.60 8e-20 Ribonuclease Phyb OS Physarum polycephalum PE 1 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 43 230 188 SSF55895 none none IPR001568
Pfam 44 229 186 PF00445 none Ribonuclease T2 family IPR001568
Phobius 1 30 30 SIGNAL_PEPTIDE none Signal peptide region none
PANTHER 10 255 246 PTHR11240:SF16 none none none
PANTHER 10 255 246 PTHR11240 none none IPR001568
Phobius 1 13 13 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
ProSitePatterns 80 87 8 PS00530 none Ribonuclease T2 family histidine active site 1. IPR018188
Gene3D 42 251 210 G3DSA:3.90.730.10 none none IPR001568
Phobius 26 30 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 31 271 241 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 14 25 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none

3 Localization

Analysis Start End Length
SignalP_EUK 1 30 29
SignalP_GRAM_POSITIVE 1 32 31
SignalP_GRAM_NEGATIVE 1 32 31

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting