Protein : Qrob_P0446540.2 Q. robur
Protein Identifier  ? Qrob_P0446540.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR24063:SF148 - PUTATIVE UNCHARACTERIZED PROTEIN Gene Prediction Quality  validated
Protein length 

Sequence

Length: 546  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0022857 transmembrane transporter activity Enables the transfer of a substance from one side of a membrane to the other.
GO:0022891 substrate-specific transmembrane transporter activity Enables the transfer of a specific substance or group of related substances from one side of a membrane to the other.
GO:0005215 transporter activity Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100246615 1 528 + 528 Gaps:2 100.00 526 83.46 0.0 PMT4 putative polyol/monosaccharide transporter
blastp_kegg lcl|pop:POPTR_0013s13890g 1 528 + 528 Gaps:3 100.00 525 80.38 0.0 POPTRDRAFT_807121 mannitol transporter family protein
blastp_kegg lcl|rcu:RCOM_1175530 1 528 + 528 Gaps:3 100.00 525 79.62 0.0 sugar transporter putative (EC:1.3.1.74)
blastp_kegg lcl|pxb:103934620 1 527 + 527 Gaps:5 99.81 533 78.20 0.0 probable polyol transporter 4
blastp_kegg lcl|tcc:TCM_008069 1 527 + 527 Gaps:6 99.81 528 80.08 0.0 Major facilitator superfamily protein
blastp_kegg lcl|pxb:103948508 1 527 + 527 Gaps:5 99.81 533 78.01 0.0 probable polyol transporter 4
blastp_kegg lcl|mdm:103405675 1 527 + 527 Gaps:5 99.81 533 77.63 0.0 probable polyol transporter 4
blastp_kegg lcl|pmum:103328548 1 527 + 527 Gaps:3 99.81 529 80.11 0.0 probable polyol transporter 4
blastp_kegg lcl|pper:PRUPE_ppa004119mg 1 527 + 527 Gaps:3 99.81 529 79.92 0.0 hypothetical protein
blastp_kegg lcl|mdm:103444121 1 527 + 527 Gaps:5 99.81 533 77.82 0.0 probable polyol transporter 4
blastp_uniprot_sprot sp|Q0WUU6|PLT4_ARATH 15 529 + 515 Gaps:7 96.96 526 74.12 0.0 Probable polyol transporter 4 OS Arabidopsis thaliana GN PLT4 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VZ80|PLT5_ARATH 56 540 + 485 Gaps:20 92.21 539 48.89 7e-160 Polyol transporter 5 OS Arabidopsis thaliana GN PLT5 PE 1 SV 2
blastp_uniprot_sprot sp|Q9XIH7|PLT1_ARATH 45 505 + 461 Gaps:17 93.15 511 48.53 2e-152 Putative polyol transporter 1 OS Arabidopsis thaliana GN PLT1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9XIH6|PLT2_ARATH 45 505 + 461 Gaps:17 93.15 511 48.11 2e-150 Putative polyol transporter 2 OS Arabidopsis thaliana GN PLT2 PE 3 SV 1
blastp_uniprot_sprot sp|Q9ZNS0|PLT3_ARATH 43 505 + 463 Gaps:16 93.90 508 49.48 7e-149 Probable polyol transporter 3 OS Arabidopsis thaliana GN PLT3 PE 3 SV 1
blastp_uniprot_sprot sp|Q8GXR2|PLT6_ARATH 44 506 + 463 Gaps:15 96.96 493 46.23 4e-147 Probable polyol transporter 6 OS Arabidopsis thaliana GN PLT6 PE 2 SV 2
blastp_uniprot_sprot sp|C0SPB2|YWTG_BACSU 64 509 + 446 Gaps:14 94.53 457 34.72 4e-78 Putative metabolite transport protein YwtG OS Bacillus subtilis (strain 168) GN ywtG PE 3 SV 1
blastp_uniprot_sprot sp|P46333|CSBC_BACSU 54 502 + 449 Gaps:25 94.14 461 35.71 1e-76 Probable metabolite transport protein CsbC OS Bacillus subtilis (strain 168) GN csbC PE 1 SV 3
blastp_uniprot_sprot sp|O52733|XYLT_LACBR 64 508 + 445 Gaps:13 94.97 457 32.03 5e-74 D-xylose-proton symporter OS Lactobacillus brevis GN xylT PE 3 SV 1
blastp_uniprot_sprot sp|Q56ZZ7|PLST4_ARATH 11 503 + 493 Gaps:24 88.10 546 36.38 3e-72 Plastidic glucose transporter 4 OS Arabidopsis thaliana GN At5g16150 PE 1 SV 2
rpsblast_cdd gnl|CDD|200987 61 505 + 445 Gaps:22 100.00 449 36.30 1e-93 pfam00083 Sugar_tr Sugar (and other) transporter.
rpsblast_cdd gnl|CDD|162084 57 501 + 445 Gaps:14 95.01 481 36.76 2e-85 TIGR00879 SP MFS transporter sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083).
rpsblast_cdd gnl|CDD|182225 51 510 + 460 Gaps:49 99.16 479 32.63 2e-75 PRK10077 xylE D-xylose transporter XylE Provisional.
rpsblast_cdd gnl|CDD|119392 55 490 + 436 Gaps:19 99.72 352 33.62 8e-23 cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters symporters and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions sugar phosphates drugs neurotransmitters nucleosides amino acids and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate while symporters and antiporters transport two substrates in the same or in opposite directions respectively across membranes. MFS proteins are typically 400 to 600 amino acids in length and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members GlpT (glycerol-3-phosphate transporter) LacY (lactose permease) and EmrD (multidrug transporter) MFS proteins are thought to function through a single substrate binding site alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4 which is impaired in type II diabetes and glucose-6-phosphate transporter (G6PT) which causes glycogen storage disease when mutated..
rpsblast_cdd gnl|CDD|162097 109 500 + 392 Gaps:44 72.08 505 23.90 2e-22 TIGR00898 2A0119 cation transport protein.
rpsblast_cdd gnl|CDD|129965 105 501 + 397 Gaps:77 86.45 502 27.42 7e-20 TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
rpsblast_cdd gnl|CDD|191813 66 454 + 389 Gaps:50 99.13 346 23.03 4e-19 pfam07690 MFS_1 Major Facilitator Superfamily.
rpsblast_cdd gnl|CDD|162095 50 440 + 391 Gaps:36 92.71 398 23.31 1e-18 TIGR00895 2A0115 benzoate transport.
rpsblast_cdd gnl|CDD|162092 86 468 + 383 Gaps:56 89.63 405 24.24 4e-14 TIGR00891 2A0112 putative sialic acid transporter.
rpsblast_cdd gnl|CDD|188094 110 485 + 376 Gaps:68 87.31 394 22.38 2e-13 TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083) including citrate-H+ symporters dicarboxylate:H+ symporters the proline/glycine-betaine transporter ProP etc.

41 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 61 504 444 PF00083 none Sugar (and other) transporter IPR005828
SUPERFAMILY 31 502 472 SSF103473 none none IPR020846
Phobius 145 155 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 397 401 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 57 86 30 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 115 125 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 175 179 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 56 56 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 98 114 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSitePatterns 157 182 26 PS00217 none Sugar transport proteins signature 2. IPR005829
PANTHER 21 528 508 PTHR24063:SF148 none none none
Coils 24 45 22 Coil none none none
PANTHER 21 528 508 PTHR24063 none none none
ProSitePatterns 361 378 18 PS00216 none Sugar transport proteins signature 1. IPR005829
Phobius 87 97 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 366 371 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 343 365 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 203 213 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PRINTS 152 171 20 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
PRINTS 406 427 22 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
PRINTS 69 79 11 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
PRINTS 316 326 11 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
PRINTS 429 441 13 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
Phobius 466 490 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSitePatterns 115 132 18 PS00216 none Sugar transport proteins signature 1. IPR005829
Phobius 214 237 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 440 460 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 402 428 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 461 465 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 126 144 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

11 Localization

Analysis Start End Length
TMHMM 218 237 19
TMHMM 440 462 22
TMHMM 57 79 22
TMHMM 403 425 22
TMHMM 469 491 22
TMHMM 152 174 22
TMHMM 99 116 17
TMHMM 374 396 22
TMHMM 181 203 22
TMHMM 342 364 22
TMHMM 129 148 19

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting