Protein : Qrob_P0433460.2 Q. robur
Protein Identifier  ? Qrob_P0433460.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K02707 - photosystem II cytochrome b559 subunit alpha Gene Prediction Quality  validated
Protein length 

Sequence

Length: 84  
Kegg Orthology  K02707
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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0046872 metal ion binding Interacting selectively and non-covalently with any metal ion.
GO:0020037 heme binding Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0009523 photosystem II A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
GO:0019684 photosynthesis, light reaction The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I.
GO:0009767 photosynthetic electron transport chain A process, occurring as part of photosynthesis, in which light provides the energy for a series of electron carriers to operate together to transfer electrons and generate a transmembrane electrochemical gradient.
GO:0009539 photosystem II reaction center An integral membrane complex containing P680, the chlorophyll a molecule that functions as a primary electron donor. In the light, functioning as a water-plastoquinone oxidoreductase, it transfers electrons from water to plastoquinone.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sly:101260260 1 83 + 83 none 71.55 116 100.00 6e-53 cytochrome b559 subunit alpha-like
blastp_kegg lcl|sot:4099861 1 83 + 83 none 100.00 83 100.00 2e-52 psbE SotuCp038 cytochrome b559 alpha subunit
blastp_kegg lcl|sly:3950399 1 83 + 83 none 100.00 83 100.00 2e-52 psbE LyesC2p052 photosystem II cytochrome b559 alpha subunit
blastp_kegg lcl|vvi:4025054 1 83 + 83 none 100.00 83 100.00 2e-52 psbE ViviCp038 cytochrome b559 alpha subunit
blastp_kegg lcl|pop:Poptr_cp040 1 83 + 83 none 100.00 83 100.00 2e-52 psbE photosystem II protein V
blastp_kegg lcl|pmum:18668048 1 83 + 83 none 100.00 83 100.00 2e-52 psbE CP95_p050 photosystem II cytochrome b559 alpha subunit
blastp_kegg lcl|pper:PrpeC_p038 1 83 + 83 none 100.00 83 100.00 2e-52 psbE photosystem II cytochrome b559 alpha subunit
blastp_kegg lcl|fve:10251536 1 83 + 83 none 100.00 83 100.00 2e-52 psbE FvH4_C0058 photosystem II cytochrome b559 alpha subunit
blastp_kegg lcl|aly:ARALYDRAFT_893948 1 83 + 83 none 100.00 83 100.00 2e-52 photosystem II protein V
blastp_kegg lcl|ath:ArthCp039 1 83 + 83 none 100.00 83 100.00 2e-52 psbE cytochrome b559 alpha subunit
blastp_pdb 2axt_E 1 79 + 79 none 94.05 84 68.35 3e-37 mol:protein length:84 Cytochrome b559 alpha subunit
blastp_pdb 1s5l_E 1 79 + 79 none 94.05 84 68.35 3e-37 mol:protein length:84 Cytochrome b559 alpha subunit
blastp_pdb 3arc_E 2 79 + 78 none 93.98 83 67.95 2e-36 mol:protein length:83 Cytochrome b559 subunit alpha
blastp_pdb 3a0h_E 3 79 + 77 none 92.77 83 68.83 4e-36 mol:protein length:83 Cytochrome b559 subunit alpha
blastp_pdb 3a0b_E 3 79 + 77 none 92.77 83 68.83 4e-36 mol:protein length:83 Cytochrome b559 subunit alpha
blastp_pdb 3prr_E 1 79 + 79 none 94.05 84 68.35 3e-37 mol:protein length:84 Cytochrome b559 subunit alpha
blastp_pdb 3prq_E 1 79 + 79 none 94.05 84 68.35 3e-37 mol:protein length:84 Cytochrome b559 subunit alpha
blastp_pdb 3bz2_E 1 79 + 79 none 94.05 84 68.35 3e-37 mol:protein length:84 Cytochrome b559 subunit alpha
blastp_pdb 3bz1_E 1 79 + 79 none 94.05 84 68.35 3e-37 mol:protein length:84 Cytochrome b559 subunit alpha
blastp_pdb 2axt_e 1 79 + 79 none 94.05 84 68.35 3e-37 mol:protein length:84 Cytochrome b559 alpha subunit
blastp_uniprot_sprot sp|Q0ZJ03|PSBE_VITVI 1 83 + 83 none 100.00 83 100.00 8e-54 Cytochrome b559 subunit alpha OS Vitis vinifera GN psbE PE 3 SV 1
blastp_uniprot_sprot sp|P69384|PSBE_TOBAC 1 83 + 83 none 100.00 83 100.00 8e-54 Cytochrome b559 subunit alpha OS Nicotiana tabacum GN psbE PE 3 SV 2
blastp_uniprot_sprot sp|Q2VEG1|PSBE_SOLTU 1 83 + 83 none 100.00 83 100.00 8e-54 Cytochrome b559 subunit alpha OS Solanum tuberosum GN psbE PE 3 SV 1
blastp_uniprot_sprot sp|Q2MI83|PSBE_SOLLC 1 83 + 83 none 100.00 83 100.00 8e-54 Cytochrome b559 subunit alpha OS Solanum lycopersicum GN psbE PE 3 SV 1
blastp_uniprot_sprot sp|Q2MIH0|PSBE_SOLBU 1 83 + 83 none 100.00 83 100.00 8e-54 Cytochrome b559 subunit alpha OS Solanum bulbocastanum GN psbE PE 3 SV 1
blastp_uniprot_sprot sp|P69385|PSBE_POPDE 1 83 + 83 none 100.00 83 100.00 8e-54 Cytochrome b559 subunit alpha OS Populus deltoides GN psbE PE 3 SV 2
blastp_uniprot_sprot sp|Q14FE0|PSBE_POPAL 1 83 + 83 none 100.00 83 100.00 8e-54 Cytochrome b559 subunit alpha OS Populus alba GN psbE PE 3 SV 1
blastp_uniprot_sprot sp|Q06GP3|PSBE_PIPCE 1 83 + 83 none 100.00 83 100.00 8e-54 Cytochrome b559 subunit alpha OS Piper cenocladum GN psbE PE 3 SV 1
blastp_uniprot_sprot sp|Q06FK9|PSBE_PELHO 1 83 + 83 none 100.00 83 100.00 8e-54 Cytochrome b559 subunit alpha OS Pelargonium hortorum GN psbE PE 3 SV 1
blastp_uniprot_sprot sp|Q76IC3|PSBE_NICTO 1 83 + 83 none 100.00 83 100.00 8e-54 Cytochrome b559 subunit alpha OS Nicotiana tomentosiformis GN psbE PE 3 SV 4

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 20 44 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 19 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Hamap 1 81 81 MF_00642 none Cytochrome b559 subunit alpha [psbE]. IPR006217
TIGRFAM 2 80 79 TIGR01332 none cyt_b559_alpha: cytochrome b559, alpha subunit IPR006217
Pfam 6 34 29 PF00283 none Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits IPR013081
ProSitePatterns 14 28 15 PS00537 none Cytochrome b559 subunits heme-binding site signature. IPR006216
Gene3D 2 83 82 G3DSA:1.20.5.860 none none none
SUPERFAMILY 3 83 81 SSF161045 none none none
Phobius 45 83 39 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 42 80 39 PF00284 none Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit IPR013082
PIRSF 1 83 83 PIRSF000036 none none IPR006217

1 Localization

Analysis Start End Length
TMHMM 20 42 22

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting