Protein : Qrob_P0433280.2 Q. robur
Protein Identifier  ? Qrob_P0433280.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K05572 - NADH dehydrogenase I subunit 1 [EC:1.6.5.3] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 660  
Kegg Orthology  K05572
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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0051287 NAD binding Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
GO:0016651 oxidoreductase activity, acting on NAD(P)H Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
GO:0048038 quinone binding Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds.
GO:0051539 4 iron, 4 sulfur cluster binding Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
GO:0051536 iron-sulfur cluster binding Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
GO:0008137 NADH dehydrogenase (ubiquinone) activity Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mtr:MTR_4g006100 3 652 + 650 Gaps:18 71.64 899 87.42 0.0 NAD(P)H-quinone oxidoreductase subunit H
blastp_kegg lcl|mtr:MTR_7g021700 117 652 + 536 Gaps:28 85.04 635 83.89 0.0 NAD(P)H-quinone oxidoreductase subunit
blastp_kegg lcl|mtr:MTR_6g042200 3 438 + 436 Gaps:6 62.70 705 85.75 0.0 NAD(P)H-quinone oxidoreductase subunit H
blastp_kegg lcl|tcc:ThcaC_p069 127 480 + 354 Gaps:4 98.62 363 89.11 0.0 ndhA NADH-plastoquinone oxidoreductase subunit 1
blastp_kegg lcl|vvi:4025044 132 471 + 340 Gaps:4 94.77 363 90.12 0.0 ndhA ndh1 ViviCp079 NADH dehydrogenase subunit 1
blastp_kegg lcl|pop:Poptr_cp084 127 480 + 354 Gaps:6 98.63 365 86.11 0.0 ndhA NADH dehydrogenase subunit 1 (EC:1.6.5.3)
blastp_kegg lcl|aly:ARALYDRAFT_333071 132 480 + 349 Gaps:8 97.23 361 86.32 0.0 NADH-plastoquinone oxidoreductase subunit 1
blastp_kegg lcl|rcu:RCOM_ORF00111 127 480 + 354 Gaps:4 98.62 363 86.87 0.0 ndhA NADH dehydrogenase subunit 1
blastp_kegg lcl|fve:10251588 128 480 + 353 Gaps:4 99.17 360 86.27 0.0 ndhA FvH4_C0110 NADH-plastoquinone oxidoreductase subunit 1
blastp_kegg lcl|pmum:18668096 132 480 + 349 Gaps:4 97.25 363 89.24 0.0 ndhA CP95_p010 NADH-plastoquinone oxidoreductase subunit 1
blastp_pdb 3m9s_D 1 132 + 132 Gaps:5 32.52 409 39.10 6e-18 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3m9s_4 1 132 + 132 Gaps:5 32.52 409 39.10 6e-18 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3ias_V 1 132 + 132 Gaps:5 32.52 409 39.10 6e-18 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3ias_M 1 132 + 132 Gaps:5 32.52 409 39.10 6e-18 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3ias_D 1 132 + 132 Gaps:5 32.52 409 39.10 6e-18 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3ias_4 1 132 + 132 Gaps:5 32.52 409 39.10 6e-18 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3iam_D 1 132 + 132 Gaps:5 32.52 409 39.10 6e-18 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3iam_4 1 132 + 132 Gaps:5 32.52 409 39.10 6e-18 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3i9v_D 1 132 + 132 Gaps:5 32.52 409 39.10 6e-18 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3i9v_4 1 132 + 132 Gaps:5 32.52 409 39.10 6e-18 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_uniprot_sprot sp|Q49KU3|NU1C_EUCGG 127 480 + 354 Gaps:4 98.62 363 88.55 0.0 NAD(P)H-quinone oxidoreductase subunit 1 chloroplastic OS Eucalyptus globulus subsp. globulus GN ndhA PE 3 SV 1
blastp_uniprot_sprot sp|Q332S2|NU1C_LACSA 127 480 + 354 Gaps:4 98.62 363 88.27 0.0 NAD(P)H-quinone oxidoreductase subunit 1 chloroplastic OS Lactuca sativa GN ndhA PE 3 SV 1
blastp_uniprot_sprot sp|Q2QD36|NU1C_CUCSA 132 480 + 349 Gaps:4 97.25 363 88.39 0.0 NAD(P)H-quinone oxidoreductase subunit 1 chloroplastic OS Cucumis sativus GN ndhA PE 3 SV 1
blastp_uniprot_sprot sp|Q09FZ1|NU1C_PLAOC 127 480 + 354 Gaps:4 98.62 363 87.15 0.0 NAD(P)H-quinone oxidoreductase subunit 1 chloroplastic OS Platanus occidentalis GN ndhA PE 3 SV 1
blastp_uniprot_sprot sp|Q0ZIW3|NU1C_VITVI 132 471 + 340 Gaps:4 94.77 363 90.12 0.0 NAD(P)H-quinone oxidoreductase subunit 1 chloroplastic OS Vitis vinifera GN ndhA PE 3 SV 1
blastp_uniprot_sprot sp|P06254|NU1C_TOBAC 127 471 + 345 Gaps:8 96.19 367 86.40 0.0 NAD(P)H-quinone oxidoreductase subunit 1 chloroplastic OS Nicotiana tabacum GN ndhA PE 3 SV 3
blastp_uniprot_sprot sp|Q14FA3|NU1C_POPAL 127 480 + 354 Gaps:6 98.63 365 86.39 0.0 NAD(P)H-quinone oxidoreductase subunit 1 chloroplastic OS Populus alba GN ndhA PE 3 SV 1
blastp_uniprot_sprot sp|Q9M3I6|NU1C_SPIOL 126 480 + 355 Gaps:4 98.36 365 87.19 0.0 NAD(P)H-quinone oxidoreductase subunit 1 chloroplastic OS Spinacia oleracea GN ndhA PE 3 SV 1
blastp_uniprot_sprot sp|A0A390|NU1C_COFAR 127 471 + 345 Gaps:4 96.14 363 87.97 0.0 NAD(P)H-quinone oxidoreductase subunit 1 chloroplastic OS Coffea arabica GN ndhA PE 3 SV 1
blastp_uniprot_sprot sp|Q68RV1|NU1C_PANGI 127 471 + 345 Gaps:4 96.14 363 87.97 0.0 NAD(P)H-quinone oxidoreductase subunit 1 chloroplastic OS Panax ginseng GN ndhA PE 3 SV 1

36 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 384 408 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 324 344 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSitePatterns 598 609 12 PS00198 none 4Fe-4S ferredoxin-type iron-sulfur binding region signature. IPR017900
Phobius 409 419 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 252 273 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 444 462 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Hamap 510 641 132 MF_01351 none NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. IPR010226
TIGRFAM 519 636 118 TIGR01971 none NuoI: NADH-quinone oxidoreductase, chain I IPR010226
Gene3D 549 617 69 G3DSA:3.30.70.20 none none none
Phobius 463 480 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 152 479 328 PF00146 none NADH dehydrogenase IPR001694
ProSitePatterns 195 210 16 PS00667 none Respiratory-chain NADH dehydrogenase subunit 1 signature 1. IPR018086
Phobius 221 240 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 241 251 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 481 659 179 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 3 131 129 SSF56762 none none IPR029014
Phobius 147 174 28 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 549 578 30 PS51379 none 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. IPR017896
Phobius 1 146 146 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 313 323 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSitePatterns 350 363 14 PS00668 none Respiratory-chain NADH dehydrogenase subunit 1 signature 2. IPR018086
Phobius 420 443 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
TIGRFAM 495 656 162 TIGR00403 none ndhI: NADH-plastoquinone oxidoreductase, I subunit IPR004497
Phobius 274 292 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 3 132 130 PF00346 none Respiratory-chain NADH dehydrogenase, 49 Kd subunit IPR001135
PANTHER 138 488 351 PTHR11432:SF5 none none none
Hamap 149 482 334 MF_01350 none NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. IPR001694
Pfam 554 609 56 PF13237 none 4Fe-4S dicluster domain IPR017896
Gene3D 3 126 124 G3DSA:1.10.645.10 none none IPR029014
SUPERFAMILY 536 636 101 SSF54862 none none none

6 Localization

Analysis Start End Length
TMHMM 456 478 22
TMHMM 221 240 19
TMHMM 373 395 22
TMHMM 421 443 22
TMHMM 152 174 22
TMHMM 255 277 22

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting