Protein : Qrob_P0422730.2 Q. robur
Protein Identifier  ? Qrob_P0422730.2 Organism . Name  Quercus robur
Score  5.3 Score Type  egn
Protein Description  (M=11) PTHR11654:SF94 - PROTEIN NRT1/ PTR FAMILY 5.10-RELATED (PTHR11654:SF94) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 582  
Kegg Orthology  K14638
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0005215 transporter activity Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0006857 oligopeptide transport The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa003472mg 1 580 + 580 Gaps:19 98.08 572 74.33 0.0 hypothetical protein
blastp_kegg lcl|pmum:103339078 1 580 + 580 Gaps:19 98.08 572 74.33 0.0 protein NRT1/ PTR FAMILY 5.10-like
blastp_kegg lcl|tcc:TCM_036497 2 580 + 579 Gaps:18 98.25 571 73.80 0.0 Major facilitator superfamily protein
blastp_kegg lcl|cit:102615123 8 577 + 570 Gaps:23 96.49 569 74.68 0.0 probable peptide/nitrate transporter At1g22540-like
blastp_kegg lcl|cic:CICLE_v10000719mg 8 577 + 570 Gaps:23 96.49 569 74.68 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0013s11120g 2 580 + 579 Gaps:20 98.94 567 73.98 0.0 hypothetical protein
blastp_kegg lcl|vvi:100854655 2 580 + 579 Gaps:18 98.08 572 71.48 0.0 probable peptide/nitrate transporter At1g22540-like
blastp_kegg lcl|pxb:103952552 2 578 + 577 Gaps:35 97.31 557 75.28 0.0 protein NRT1/ PTR FAMILY 5.10-like
blastp_kegg lcl|mdm:103402195 2 580 + 579 Gaps:35 93.57 684 76.41 0.0 protein NRT1/ PTR FAMILY 5.10-like
blastp_kegg lcl|vvi:100854725 2 580 + 579 Gaps:18 98.08 572 72.73 0.0 probable peptide/nitrate transporter At1g22540-like
blastp_pdb 2xut_C 30 501 + 472 Gaps:70 81.68 524 28.74 2e-22 mol:protein length:524 PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN
blastp_pdb 2xut_B 30 501 + 472 Gaps:70 81.68 524 28.74 2e-22 mol:protein length:524 PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN
blastp_pdb 2xut_A 30 501 + 472 Gaps:70 81.68 524 28.74 2e-22 mol:protein length:524 PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN
blastp_uniprot_sprot sp|Q0WP01|PTR9_ARATH 3 581 + 579 Gaps:33 98.03 557 66.85 0.0 Protein NRT1/ PTR FAMILY 5.10 OS Arabidopsis thaliana GN NPF5.10 PE 2 SV 1
blastp_uniprot_sprot sp|Q0WSZ6|PTR23_ARATH 2 577 + 576 Gaps:28 98.40 561 58.88 0.0 Protein NRT1/ PTR FAMILY 5.13 OS Arabidopsis thaliana GN NPF5.13 PE 2 SV 2
blastp_uniprot_sprot sp|Q8VZE2|PTR22_ARATH 8 577 + 570 Gaps:32 97.31 557 59.96 0.0 Protein NRT1/ PTR FAMILY 5.14 OS Arabidopsis thaliana GN NPF5.14 PE 2 SV 2
blastp_uniprot_sprot sp|Q9C7U1|PTR25_ARATH 8 579 + 572 Gaps:45 97.12 555 58.07 0.0 Protein NRT1/ PTR FAMILY 5.12 OS Arabidopsis thaliana GN NPF5.12 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SK96|PTR10_ARATH 2 577 + 576 Gaps:28 98.23 564 58.48 0.0 Protein NRT1/ PTR FAMILY 5.16 OS Arabidopsis thaliana GN NPF5.16 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SK99|PTR11_ARATH 2 577 + 576 Gaps:35 98.23 565 58.20 0.0 Protein NRT1/ PTR FAMILY 5.15 OS Arabidopsis thaliana GN NPF5.15 PE 2 SV 1
blastp_uniprot_sprot sp|Q8RX67|PTR24_ARATH 8 580 + 573 Gaps:58 97.58 538 59.43 0.0 Protein NRT1/ PTR FAMILY 5.11 OS Arabidopsis thaliana GN NPF5.11 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M1I2|PTR46_ARATH 23 577 + 555 Gaps:37 96.22 555 47.19 6e-175 Protein NRT1/ PTR FAMILY 5.4 OS Arabidopsis thaliana GN NPF5.4 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VZR7|PTR30_ARATH 9 581 + 573 Gaps:22 94.85 583 45.57 3e-152 Protein NRT1/ PTR FAMILY 5.1 OS Arabidopsis thaliana GN NPF5.1 PE 2 SV 2
blastp_uniprot_sprot sp|Q9M390|PTR1_ARATH 9 577 + 569 Gaps:22 97.72 570 42.55 4e-150 Protein NRT1/ PTR FAMILY 8.1 OS Arabidopsis thaliana GN NPF8.1 PE 2 SV 1
rpsblast_cdd gnl|CDD|144446 97 512 + 416 Gaps:46 100.00 372 34.95 1e-65 pfam00854 PTR2 POT family. The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters.
rpsblast_cdd gnl|CDD|32918 30 525 + 496 Gaps:76 86.75 498 24.77 8e-35 COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism].
rpsblast_cdd gnl|CDD|162112 44 452 + 409 Gaps:81 53.21 654 33.62 7e-29 TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics the antitumor agent bestatin and various protease inhibitors).
rpsblast_cdd gnl|CDD|162111 38 522 + 485 Gaps:78 88.21 475 23.39 2e-15 TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter) bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters although they are found in yeast plants and animals. They function by proton symport in a 1:1 stoichiometry which is variable in different species. All of them are predicted to contain 12 transmembrane domains for which limited experimental evidence exists.
rpsblast_cdd gnl|CDD|185359 30 244 + 215 Gaps:28 37.93 493 28.34 4e-13 PRK15462 PRK15462 dipeptide/tripeptide permease D Provisional.
rpsblast_kog gnl|CDD|36451 12 577 + 566 Gaps:38 96.67 571 49.09 1e-160 KOG1237 KOG1237 KOG1237 H+/oligopeptide symporter [Amino acid transport and metabolism].

31 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 527 549 23 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 494 504 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 162 190 29 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSitePatterns 86 110 25 PS01022 "Reactome:REACT_15518","Reactome:REACT_19419" PTR2 family proton/oligopeptide symporters signature 1. IPR018456
Phobius 191 210 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 143 161 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 101 123 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 237 342 106 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 474 493 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 410 420 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 550 569 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 95 100 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 74 94 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 73 73 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 343 569 227 G3DSA:1.20.1250.20 none none none
Phobius 211 215 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 443 473 31 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 343 364 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 8 577 570 PTHR11654 "Reactome:REACT_15518","Reactome:REACT_19419";signature_desc=OLIGOPEPTIDE TRANSPORTER-RELATED none IPR000109
Phobius 365 383 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 44 248 205 G3DSA:1.20.1250.20 none none none
Phobius 421 442 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 384 409 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 216 236 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 8 577 570 PTHR11654:SF94 none none none
Phobius 505 526 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 570 581 12 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 97 510 414 PF00854 "Reactome:REACT_15518","Reactome:REACT_19419" POT family IPR000109
SUPERFAMILY 20 246 227 SSF103473 none none IPR020846
SUPERFAMILY 327 571 245 SSF103473 none none IPR020846

11 Localization

Analysis Start End Length
TMHMM 143 162 19
TMHMM 385 407 22
TMHMM 101 123 22
TMHMM 72 94 22
TMHMM 504 526 22
TMHMM 462 484 22
TMHMM 420 442 22
TMHMM 343 365 22
TMHMM 188 210 22
TMHMM 214 236 22
TMHMM 548 570 22

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting