Protein : Qrob_P0416920.2 Q. robur
Protein Identifier  ? Qrob_P0416920.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=9) K01166 - ribonuclease T2 [EC:3.1.27.1] Code Enzyme  EC:3.1.27.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 227  
Kegg Orthology  K01166
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0033897 ribonuclease T2 activity Catalysis of the two-stage endonucleolytic cleavage to nucleoside 3'-phosphates and 3'-phosphooligonucleotides with 2',3'-cyclic phosphate intermediates.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103321574 1 226 + 226 Gaps:1 100.00 227 74.89 9e-126 ribonuclease 3-like
blastp_kegg lcl|pper:PRUPE_ppa011014mg 1 226 + 226 Gaps:1 100.00 227 74.45 4e-125 hypothetical protein
blastp_kegg lcl|fve:101303991 7 226 + 220 Gaps:2 96.94 229 72.07 2e-121 ribonuclease 3-like
blastp_kegg lcl|gmx:100306447 1 226 + 226 none 100.00 226 69.47 2e-119 uncharacterized LOC100306447
blastp_kegg lcl|mdm:103451816 15 226 + 212 none 93.39 227 74.06 1e-118 ribonuclease 3-like
blastp_kegg lcl|pxb:103950816 15 226 + 212 none 93.39 227 74.06 2e-118 ribonuclease 3-like
blastp_kegg lcl|gmx:100778239 1 226 + 226 none 100.00 226 68.58 3e-118 ribonuclease 3-like
blastp_kegg lcl|mtr:MTR_5g041010 6 226 + 221 none 97.36 227 70.59 6e-117 LCR-like protein
blastp_kegg lcl|pvu:PHAVU_002G084500g 1 226 + 226 none 100.00 226 69.03 3e-116 hypothetical protein
blastp_kegg lcl|cit:102615052 1 226 + 226 none 100.00 226 66.81 3e-115 ribonuclease 3-like
blastp_pdb 1iyb_B 22 226 + 205 none 98.56 208 62.44 1e-98 mol:protein length:208 Ribonuclease
blastp_pdb 1iyb_A 22 226 + 205 none 98.56 208 62.44 1e-98 mol:protein length:208 Ribonuclease
blastp_pdb 1dix_A 23 226 + 204 Gaps:1 98.56 208 60.98 1e-93 mol:protein length:208 EXTRACELLULAR RIBONUCLEASE LE
blastp_pdb 1vd3_A 22 226 + 205 Gaps:4 94.47 217 54.63 7e-84 mol:protein length:217 RNase NGR3
blastp_pdb 1vd1_A 22 226 + 205 Gaps:4 94.47 217 54.63 7e-84 mol:protein length:217 RNase NGR3
blastp_pdb 1vcz_A 22 226 + 205 Gaps:4 94.47 217 54.63 7e-84 mol:protein length:217 RNase NGR3
blastp_pdb 1ucd_A 26 209 + 184 Gaps:7 94.21 190 37.99 2e-31 mol:protein length:190 Ribonuclease MC
blastp_pdb 1ucc_A 26 209 + 184 Gaps:7 94.21 190 37.99 2e-31 mol:protein length:190 Ribonuclease MC
blastp_pdb 1uca_A 26 209 + 184 Gaps:7 94.21 190 37.99 2e-31 mol:protein length:190 Ribonuclease MC
blastp_pdb 1bk7_A 26 209 + 184 Gaps:7 94.21 190 37.99 2e-31 mol:protein length:190 PROTEIN (RIBONUCLEASE MC1)
blastp_uniprot_sprot sp|P42815|RNS3_ARATH 7 226 + 220 none 99.10 222 62.73 6e-104 Ribonuclease 3 OS Arabidopsis thaliana GN RNS3 PE 2 SV 1
blastp_uniprot_sprot sp|P80022|RNLE_SOLLC 8 226 + 219 Gaps:1 95.65 230 60.45 8e-98 Extracellular ribonuclease LE OS Solanum lycopersicum PE 1 SV 2
blastp_uniprot_sprot sp|P80196|RNLX_SOLLC 1 226 + 226 Gaps:5 95.78 237 57.71 1e-94 Intracellular ribonuclease LX OS Solanum lycopersicum GN RNALX PE 1 SV 2
blastp_uniprot_sprot sp|P42813|RNS1_ARATH 8 226 + 219 Gaps:2 96.09 230 59.73 2e-94 Ribonuclease 1 OS Arabidopsis thaliana GN RNS1 PE 1 SV 1
blastp_uniprot_sprot sp|Q7M438|RNDI_DICDI 1 225 + 225 Gaps:22 99.10 223 39.82 3e-36 Ribonuclease DdI OS Dictyostelium discoideum GN ddiA PE 1 SV 3
blastp_uniprot_sprot sp|P42814|RNS2_ARATH 24 226 + 203 Gaps:18 81.47 259 40.76 3e-36 Ribonuclease 2 OS Arabidopsis thaliana GN RNS2 PE 2 SV 1
blastp_uniprot_sprot sp|P23540|RNMC_MOMCH 26 209 + 184 Gaps:6 94.24 191 37.22 1e-30 Ribonuclease MC OS Momordica charantia PE 1 SV 1
blastp_uniprot_sprot sp|P83618|RN28_PANGI 28 209 + 182 Gaps:5 74.37 238 32.20 3e-28 Ribonuclease-like storage protein OS Panax ginseng PE 1 SV 2
blastp_uniprot_sprot sp|Q38716|RNS2_ANTHI 4 212 + 209 Gaps:17 86.81 235 35.78 3e-27 Ribonuclease S-2 OS Antirrhinum hispanicum GN S2 PE 2 SV 1
blastp_uniprot_sprot sp|P93460|RNS5_PYRPY 3 212 + 210 Gaps:11 90.31 227 34.15 1e-25 Ribonuclease S-5 OS Pyrus pyrifolia PE 1 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 209 209 PTHR11240 none none IPR001568
Phobius 11 22 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SUPERFAMILY 20 225 206 SSF55895 none none IPR001568
Phobius 1 40 40 SIGNAL_PEPTIDE none Signal peptide region none
Gene3D 21 225 205 G3DSA:3.90.730.10 none none IPR001568
Phobius 41 226 186 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 10 10 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
ProSitePatterns 58 65 8 PS00530 none Ribonuclease T2 family histidine active site 1. IPR018188
ProSitePatterns 111 122 12 PS00531 none Ribonuclease T2 family histidine active site 2. IPR018188
Phobius 23 40 18 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Pfam 26 209 184 PF00445 none Ribonuclease T2 family IPR001568

1 Localization

Analysis Start End Length
SignalP_EUK 1 23 22

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting