Protein : Qrob_P0413180.2 Q. robur
Protein Identifier  ? Qrob_P0413180.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) 2.1.1.225 - tRNA:m(4)X modification enzyme. Code Enzyme  EC:2.1.1.225
Gene Prediction Quality  validated Protein length 

Sequence

Length: 460  
Kegg Orthology  K15446
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0008168 methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
GO:0008033 tRNA processing The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103327274 1 454 + 454 Gaps:19 98.92 464 76.47 0.0 tRNA:m(4)X modification enzyme TRM13 homolog
blastp_kegg lcl|pper:PRUPE_ppa005383mg 5 459 + 455 Gaps:18 99.35 464 75.49 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0002s19050g 1 456 + 456 Gaps:32 99.33 447 75.45 0.0 POPTRDRAFT_711436 hypothetical protein
blastp_kegg lcl|tcc:TCM_004906 5 459 + 455 Gaps:26 99.34 458 74.29 0.0 Methyltransferases isoform 1
blastp_kegg lcl|pxb:103964908 5 458 + 454 Gaps:22 99.13 462 75.55 0.0 tRNA:m(4)X modification enzyme TRM13 homolog
blastp_kegg lcl|pxb:103953085 5 458 + 454 Gaps:22 99.13 462 75.55 0.0 tRNA:m(4)X modification enzyme TRM13 homolog
blastp_kegg lcl|mdm:103421931 5 458 + 454 Gaps:22 99.13 462 74.89 0.0 tRNA:m(4)X modification enzyme TRM13 homolog
blastp_kegg lcl|cit:102630836 1 454 + 454 Gaps:30 98.89 451 73.99 0.0 tRNA:m(4)X modification enzyme TRM13 homolog
blastp_kegg lcl|rcu:RCOM_1344230 1 457 + 457 Gaps:41 99.54 438 74.31 0.0 hypothetical protein
blastp_kegg lcl|vvi:100248556 5 459 + 455 Gaps:25 99.35 465 70.13 0.0 tRNA guanosine-2'-O-methyltransferase TRM13 homolog
blastp_uniprot_sprot sp|Q8BYH3|TRM13_MOUSE 5 453 + 449 Gaps:112 93.76 481 33.48 1e-45 tRNA:m(4)X modification enzyme TRM13 homolog OS Mus musculus GN Trmt13 PE 2 SV 1
blastp_uniprot_sprot sp|Q9NUP7|TRM13_HUMAN 5 453 + 449 Gaps:113 93.97 481 32.08 5e-41 tRNA:m(4)X modification enzyme TRM13 homolog OS Homo sapiens GN TRMT13 PE 1 SV 2
blastp_uniprot_sprot sp|A7TSF4|TRM13_VANPO 5 453 + 449 Gaps:128 96.98 430 31.41 4e-31 tRNA:m(4)X modification enzyme TRM13 OS Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN TRM13 PE 3 SV 1
blastp_uniprot_sprot sp|Q75AT3|TRM13_ASHGO 5 454 + 450 Gaps:134 94.57 442 29.90 3e-29 tRNA:m(4)X modification enzyme TRM13 OS Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN TRM13 PE 3 SV 2
blastp_uniprot_sprot sp|Q9UTH1|TRM13_SCHPO 33 453 + 421 Gaps:108 93.75 368 33.62 3e-29 tRNA:m(4)X modification enzyme TRM13 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN trm13 PE 3 SV 2
blastp_uniprot_sprot sp|Q6CP50|TRM13_KLULA 5 453 + 449 Gaps:118 94.70 434 28.71 3e-28 tRNA:m(4)X modification enzyme TRM13 OS Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN TRM13 PE 3 SV 1
blastp_uniprot_sprot sp|Q12383|TRM13_YEAST 5 453 + 449 Gaps:149 95.38 476 27.97 1e-27 tRNA:m(4)X modification enzyme TRM13 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN TRM13 PE 1 SV 1
blastp_uniprot_sprot sp|Q6C4F8|TRM13_YARLI 5 452 + 448 Gaps:118 89.22 464 29.71 2e-26 tRNA:m(4)X modification enzyme TRM13 OS Yarrowia lipolytica (strain CLIB 122 / E 150) GN TRM13 PE 3 SV 1
blastp_uniprot_sprot sp|Q54BD5|TRM13_DICDI 165 453 + 289 Gaps:46 52.76 525 32.13 6e-20 tRNA:m(4)X modification enzyme TRM13 homolog OS Dictyostelium discoideum GN trm13 PE 3 SV 1
blastp_uniprot_sprot sp|Q6BP10|TRM13_DEBHA 5 448 + 444 Gaps:115 89.93 457 26.76 1e-16 tRNA:m(4)X modification enzyme TRM13 OS Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN TRM13 PE 3 SV 2
rpsblast_cdd gnl|CDD|147414 170 454 + 285 Gaps:43 100.00 256 46.09 2e-86 pfam05206 TRM13 Methyltransferase TRM13. This is a family of eukaryotic proteins which are responsible for 2'-O-methylation of tRNA at position 4. TRM13 shows no sequence similarity to other known methyltransferases.
rpsblast_kog gnl|CDD|38022 4 457 + 454 Gaps:103 95.95 420 40.94 9e-79 KOG2811 KOG2811 KOG2811 Uncharacterized conserved protein [Function unknown].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 105 186 82 PTHR12998:SF0 none none none
PANTHER 5 83 79 PTHR12998:SF0 none none none
PANTHER 202 458 257 PTHR12998 none none none
Pfam 4 33 30 PF11722 "MetaCyc:PWY-6829" CCCH zinc finger in TRM13 protein IPR021721
PANTHER 105 186 82 PTHR12998 none none none
PANTHER 5 83 79 PTHR12998 none none none
Pfam 170 453 284 PF05206 "MetaCyc:PWY-6829" Methyltransferase TRM13 IPR007871
SUPERFAMILY 209 280 72 SSF53335 none none IPR029063
SUPERFAMILY 315 454 140 SSF53335 none none IPR029063
PANTHER 202 458 257 PTHR12998:SF0 none none none

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4

0 Targeting