Protein : Qrob_P0404150.2 Q. robur
Protein Identifier  ? Qrob_P0404150.2 Organism . Name  Quercus robur
Score  76.1 Score Type  egn
Protein Description  (M=2) PTHR19308//PTHR19308:SF5 - PHOSPHATIDYLCHOLINE TRANSFER PROTEIN // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 412  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

1 GO Terms

Identifier Name Description
GO:0008289 lipid binding Interacting selectively and non-covalently with a lipid.

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100247984 2 410 + 409 Gaps:17 95.89 438 65.48 0.0 uncharacterized LOC100247984
blastp_kegg lcl|pop:POPTR_0015s00730g 5 411 + 407 Gaps:30 93.09 405 71.35 0.0 POPTRDRAFT_1100582 hypothetical protein
blastp_kegg lcl|pop:POPTR_0012s02830g 5 407 + 403 Gaps:41 92.04 402 72.16 0.0 POPTRDRAFT_891635 hypothetical protein
blastp_kegg lcl|pmum:103333570 1 405 + 405 Gaps:14 93.50 446 64.75 0.0 uncharacterized LOC103333570
blastp_kegg lcl|gmx:100802806 8 409 + 402 Gaps:17 94.58 443 64.44 0.0 uncharacterized LOC100802806
blastp_kegg lcl|tcc:TCM_015508 5 410 + 406 Gaps:14 96.11 437 64.29 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein
blastp_kegg lcl|gmx:100785446 8 409 + 402 Gaps:16 94.57 442 63.64 0.0 uncharacterized LOC100785446
blastp_kegg lcl|fve:101306175 5 411 + 407 Gaps:13 95.22 439 63.16 0.0 uncharacterized protein LOC101306175
blastp_kegg lcl|pmum:103343932 2 410 + 409 Gaps:8 95.86 435 63.07 0.0 uncharacterized LOC103343932
blastp_kegg lcl|pper:PRUPE_ppa026850mg 1 410 + 410 Gaps:22 95.84 409 67.35 0.0 hypothetical protein
blastp_pdb 1ln3_B 148 318 + 171 Gaps:16 78.04 214 25.15 3e-08 mol:protein length:214 Phosphatidylcholine transfer protein
blastp_pdb 1ln3_A 148 318 + 171 Gaps:16 78.04 214 25.15 3e-08 mol:protein length:214 Phosphatidylcholine transfer protein
blastp_pdb 1ln2_B 148 318 + 171 Gaps:16 78.04 214 25.15 3e-08 mol:protein length:214 Phosphatidylcholine transfer protein
blastp_pdb 1ln2_A 148 318 + 171 Gaps:16 78.04 214 25.15 3e-08 mol:protein length:214 Phosphatidylcholine transfer protein
blastp_pdb 1ln1_A 148 318 + 171 Gaps:16 78.04 214 25.15 3e-08 mol:protein length:214 Phosphatidylcholine transfer protein
blastp_uniprot_sprot sp|Q8R1R3|STAR7_MOUSE 123 272 + 150 Gaps:9 39.95 373 31.54 1e-11 StAR-related lipid transfer protein 7 mitochondrial OS Mus musculus GN Stard7 PE 2 SV 2
blastp_uniprot_sprot sp|Q9NQZ5|STAR7_HUMAN 129 272 + 144 Gaps:9 38.65 370 30.77 5e-10 StAR-related lipid transfer protein 7 mitochondrial OS Homo sapiens GN STARD7 PE 1 SV 2
blastp_uniprot_sprot sp|P53809|PPCT_RAT 148 318 + 171 Gaps:16 78.04 214 25.75 1e-07 Phosphatidylcholine transfer protein OS Rattus norvegicus GN Pctp PE 2 SV 2
blastp_uniprot_sprot sp|Q9UKL6|PPCT_HUMAN 148 318 + 171 Gaps:16 78.04 214 25.15 1e-07 Phosphatidylcholine transfer protein OS Homo sapiens GN PCTP PE 1 SV 1
blastp_uniprot_sprot sp|P02720|PPCT_BOVIN 148 318 + 171 Gaps:16 78.40 213 23.95 7e-07 Phosphatidylcholine transfer protein OS Bos taurus GN PCTP PE 1 SV 1
rpsblast_cdd gnl|CDD|176879 106 316 + 211 Gaps:6 100.00 209 54.07 3e-78 cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2 -7 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein which traffics PtdCho the most common class of phospholipids in eukaryotes between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism in the development of atherosclerosis and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of PtdCho to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers. It showed a preference for phosphatidylserine cholesterol and phosphatidylglycerol.
rpsblast_cdd gnl|CDD|176920 128 290 + 163 Gaps:17 76.33 207 29.11 8e-13 cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers it showed a preference for phosphatidylserine cholesterol and phosphatidylglycerol.
rpsblast_cdd gnl|CDD|176851 142 310 + 169 Gaps:19 84.97 193 20.73 1e-09 cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15 and related domains such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family specific lipids that bind in this pocket are known these include cholesterol (STARD1/STARD3/ STARD4/STARD5) 25-hydroxycholesterol (STARD5) phosphatidylcholine (STARD2/ STARD7/STARD10) phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular processes including lipid trafficking between intracellular compartments lipid metabolism and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer genetic disorders and autoimmune disease. The Arabidopsis homeobox protein GLABRA 2 suppresses root hair formation in hairless epidermal root cells.
rpsblast_cdd gnl|CDD|176919 111 316 + 206 Gaps:20 96.62 207 24.50 4e-09 cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein which traffics PtdCho the most common class of phospholipids in eukaryotes between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism in the development of atherosclerosis and may have a mitochondrial function.
rpsblast_cdd gnl|CDD|197591 141 263 + 123 Gaps:4 60.00 205 24.39 7e-08 smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein.
rpsblast_kog gnl|CDD|37972 102 320 + 219 Gaps:7 99.54 219 49.08 1e-71 KOG2761 KOG2761 KOG2761 START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 129 318 190 PS50848 none START domain profile. IPR002913
Gene3D 106 319 214 G3DSA:3.30.530.20 none none IPR023393
PANTHER 104 407 304 PTHR19308:SF5 none none none
PANTHER 3 70 68 PTHR19308:SF5 none none none
Phobius 1 5 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 111 317 207 SSF55961 none none none
PANTHER 104 407 304 PTHR19308 none none none
PANTHER 3 70 68 PTHR19308 none none none
Phobius 28 411 384 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 6 27 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

1 Localization

Analysis Start End Length
TMHMM 5 27 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

0 Targeting