Protein : Qrob_P0401690.2 Q. robur
Protein Identifier  ? Qrob_P0401690.2 Organism . Name  Quercus robur
Score  42.0 Score Type  egn
Protein Description  (M=23) K14709 - solute carrier family 39 (zinc transporter), member 1/2/3 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 350  
Kegg Orthology  K14709
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0030001 metal ion transport The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0046873 metal ion transmembrane transporter activity Enables the transfer of metal ions from one side of a membrane to the other.
GO:0005385 zinc ion transmembrane transporter activity Enables the transfer of zinc (Zn) ions from one side of a membrane to the other.
GO:0071577 zinc II ion transmembrane transport A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0122460 14 349 + 336 Gaps:7 94.43 359 76.40 0.0 zinc/iron transporter putative (EC:1.3.1.74)
blastp_kegg lcl|mdm:103435313 14 349 + 336 Gaps:2 94.94 356 76.92 0.0 zinc transporter 1-like
blastp_kegg lcl|fve:101311547 14 349 + 336 Gaps:2 95.21 355 78.99 0.0 zinc transporter 1-like
blastp_kegg lcl|pper:PRUPE_ppa007253mg 21 349 + 329 Gaps:2 88.03 376 81.27 4e-179 hypothetical protein
blastp_kegg lcl|pmum:103325500 14 349 + 336 Gaps:2 94.94 356 79.29 4e-179 zinc transporter 8-like
blastp_kegg lcl|cit:102627766 4 349 + 346 Gaps:7 97.75 355 70.61 3e-177 zinc transporter 8-like
blastp_kegg lcl|pxb:103953245 14 349 + 336 Gaps:2 94.94 356 78.40 4e-176 zinc transporter 1-like
blastp_kegg lcl|pxb:103945189 14 349 + 336 Gaps:2 94.15 359 76.04 3e-175 zinc transporter 1-like
blastp_kegg lcl|mdm:103445990 14 349 + 336 Gaps:2 94.41 358 77.51 7e-175 zinc transporter 1-like
blastp_kegg lcl|rcu:RCOM_1247260 15 349 + 335 Gaps:9 95.77 355 70.00 2e-172 zinc/iron transporter putative (EC:1.3.1.74)
blastp_uniprot_sprot sp|O81123|ZIP1_ARATH 18 349 + 332 Gaps:20 92.39 355 64.33 2e-141 Zinc transporter 1 OS Arabidopsis thaliana GN ZIP1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6L8G0|ZIP5_ORYSJ 1 349 + 349 Gaps:9 98.58 353 55.46 5e-132 Zinc transporter 5 OS Oryza sativa subsp. japonica GN ZIP5 PE 2 SV 1
blastp_uniprot_sprot sp|O23039|ZIP5_ARATH 20 349 + 330 Gaps:10 92.22 360 56.93 1e-128 Zinc transporter 5 OS Arabidopsis thaliana GN ZIP5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SLG3|ZIP3_ARATH 5 349 + 345 Gaps:35 97.94 339 56.63 6e-121 Zinc transporter 3 OS Arabidopsis thaliana GN ZIP3 PE 2 SV 1
blastp_uniprot_sprot sp|A3BI11|ZIP8_ORYSJ 39 349 + 311 Gaps:31 87.69 390 58.19 1e-118 Zinc transporter 8 OS Oryza sativa subsp. japonica GN ZIP8 PE 2 SV 1
blastp_uniprot_sprot sp|Q7XLD4|ZIP3_ORYSJ 9 349 + 341 Gaps:15 96.70 364 54.55 7e-118 Zinc transporter 3 OS Oryza sativa subsp. japonica GN ZIP3 PE 1 SV 2
blastp_uniprot_sprot sp|Q75HB1|IRT1_ORYSJ 13 349 + 337 Gaps:18 93.32 374 50.72 2e-116 Fe(2+) transport protein 1 OS Oryza sativa subsp. japonica GN IRT1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FIS2|ZIP12_ARATH 7 349 + 343 Gaps:17 96.90 355 54.07 8e-113 Probable zinc transporter 12 OS Arabidopsis thaliana GN ZIP12 PE 3 SV 1
blastp_uniprot_sprot sp|Q6L8G1|IRT2_ORYSJ 29 349 + 321 Gaps:14 88.38 370 52.60 2e-112 Fe(2+) transport protein 2 OS Oryza sativa subsp. japonica GN IRT2 PE 2 SV 1
blastp_uniprot_sprot sp|Q8W245|ZIP10_ARATH 21 349 + 329 Gaps:7 91.21 364 50.60 9e-111 Probable zinc transporter 10 OS Arabidopsis thaliana GN ZIP10 PE 1 SV 2
rpsblast_cdd gnl|CDD|162055 22 349 + 328 Gaps:4 100.00 324 63.27 1e-126 TIGR00820 zip ZIP zinc/iron transport family. The Zinc (Zn2+)-Iron (Fe2+) Permease (ZIP) Family (TC 2.A.5)Members of the ZIP family consist of proteins with eight putative transmembrane spanners. They are derived from animals plants and yeast. Theycomprise a diverse family with several paralogues in any one organism (e.g. at least five in Caenorabditis elegans at least five in Arabidopsis thaliana and two inSaccharomyces cervisiae. The two S. cerevisiae proteins Zrt1 and Zrt2 both probably transport Zn2+ with high specificity but Zrt1 transports Zn2+ with ten-fold higher affinitythan Zrt2. Some members of the ZIP family have been shown to transport Zn2+ while others transport Fe2+ and at least one transports a range of metal ions. The energy source fortransport has not been characterized but these systems probably function as secondary carriers.
rpsblast_cdd gnl|CDD|177818 4 349 + 346 Gaps:19 97.03 337 52.29 5e-92 PLN02159 PLN02159 Fe(2+) transport protein.
rpsblast_cdd gnl|CDD|202272 37 346 + 310 Gaps:12 100.00 314 36.31 5e-61 pfam02535 Zip ZIP Zinc transporter. The ZIP family consists of zinc transport proteins and many putative metal transporters. The main contribution to this family is from the Arabidopsis thaliana ZIP protein family these proteins are responsible for zinc uptake in the plant. Also found within this family are C. elegans proteins of unknown function which are annotated as being similar to human growth arrest inducible gene product although this protein in not found within this family.
rpsblast_kog gnl|CDD|36771 23 349 + 327 Gaps:3 99.69 327 46.32 4e-84 KOG1558 KOG1558 KOG1558 Fe2+/Zn2+ regulated transporter [Inorganic ion transport and metabolism].

25 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 25 39 15 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 4 19 16 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 244 254 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 255 277 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 297 317 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 62 72 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 318 328 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 40 61 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 349 349 1 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 219 223 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 95 113 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 38 346 309 PF02535 none ZIP Zinc transporter IPR003689
Phobius 1 24 24 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 199 218 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 224 243 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 20 349 330 PTHR11040 none none none
Phobius 278 296 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 329 348 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 20 349 330 PTHR11040:SF35 none none none
TIGRFAM 22 349 328 TIGR00820 none zip: ZIP zinc/iron transport family IPR004698
Phobius 73 94 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 140 198 59 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 114 139 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 20 24 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none

10 Localization

Analysis Start End Length
SignalP_EUK 1 20 19
TMHMM 255 277 22
TMHMM 329 348 19
TMHMM 287 309 22
TMHMM 42 60 18
TMHMM 72 94 22
SignalP_GRAM_NEGATIVE 1 20 19
SignalP_GRAM_POSITIVE 1 20 19
TMHMM 5 22 17
TMHMM 114 136 22

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18

0 Targeting