Protein : Qrob_P0397180.2 Q. robur
Protein Identifier  ? Qrob_P0397180.2 Organism . Name  Quercus robur
Score  89.0 Score Type  egn
Protein Description  (M=16) 3.2.1.67 - Galacturan 1,4-alpha-galacturonidase. Code Enzyme  EC:3.2.1.67
Gene Prediction Quality  validated Protein length 

Sequence

Length: 397  
Kegg Orthology  K01213
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103326613 1 395 + 395 Gaps:3 98.50 400 57.87 1e-153 exopolygalacturonase-like
blastp_kegg lcl|tcc:TCM_030754 3 396 + 394 Gaps:10 96.63 416 55.72 2e-153 Pectin lyase-like superfamily protein putative
blastp_kegg lcl|mdm:103430099 27 395 + 369 Gaps:2 96.60 382 56.37 4e-143 exopolygalacturonase-like
blastp_kegg lcl|mdm:103413213 27 395 + 369 Gaps:2 96.60 382 56.37 6e-143 exopolygalacturonase-like
blastp_kegg lcl|pmum:103326487 18 395 + 378 Gaps:2 91.97 411 54.50 2e-140 polygalacturonase-like
blastp_kegg lcl|mdm:103445827 1 396 + 396 Gaps:4 99.50 400 51.26 2e-139 exopolygalacturonase-like
blastp_kegg lcl|pxb:103957362 1 396 + 396 Gaps:4 99.00 402 51.51 8e-138 exopolygalacturonase-like
blastp_kegg lcl|pxb:103968075 1 395 + 395 Gaps:2 98.01 403 52.41 8e-138 exopolygalacturonase-like
blastp_kegg lcl|pxb:103946065 29 396 + 368 Gaps:2 95.34 386 54.35 2e-137 exopolygalacturonase-like
blastp_kegg lcl|mdm:103428527 1 395 + 395 Gaps:2 98.01 403 52.66 5e-137 exopolygalacturonase-like
blastp_pdb 1bhe_A 121 367 + 247 Gaps:26 64.10 376 32.78 9e-16 mol:protein length:376 POLYGALACTURONASE
blastp_pdb 1czf_B 153 387 + 235 Gaps:16 64.92 362 26.81 2e-13 mol:protein length:362 POLYGALACTURONASE II
blastp_pdb 1czf_A 153 387 + 235 Gaps:16 64.92 362 26.81 2e-13 mol:protein length:362 POLYGALACTURONASE II
blastp_pdb 2iq7_G 123 382 + 260 Gaps:23 75.22 339 27.45 5e-13 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_F 123 382 + 260 Gaps:23 75.22 339 27.45 5e-13 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_E 123 382 + 260 Gaps:23 75.22 339 27.45 5e-13 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_D 123 382 + 260 Gaps:23 75.22 339 27.45 5e-13 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_C 123 382 + 260 Gaps:23 75.22 339 27.45 5e-13 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_B 123 382 + 260 Gaps:23 75.22 339 27.45 5e-13 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_A 123 382 + 260 Gaps:23 75.22 339 27.45 5e-13 mol:protein length:339 endopolygalacturonase
blastp_uniprot_sprot sp|Q6H9K0|PGLR2_PLAAC 28 392 + 365 Gaps:5 96.55 377 46.43 9e-115 Exopolygalacturonase (Fragment) OS Platanus acerifolia GN plaa2 PE 1 SV 1
blastp_uniprot_sprot sp|Q05967|PGLR_TOBAC 8 395 + 388 Gaps:9 96.21 396 46.19 2e-113 Polygalacturonase OS Nicotiana tabacum GN PG1 PE 2 SV 1
blastp_uniprot_sprot sp|P35337|PGLR_BRANA 41 396 + 356 Gaps:4 89.67 397 47.47 3e-111 Polygalacturonase OS Brassica napus PE 2 SV 1
blastp_uniprot_sprot sp|Q39786|PGLR_GOSHI 12 395 + 384 Gaps:4 94.35 407 44.01 1e-108 Polygalacturonase OS Gossypium hirsutum GN G9 PE 2 SV 1
blastp_uniprot_sprot sp|Q39766|PGLR_GOSBA 12 395 + 384 Gaps:4 94.35 407 44.27 1e-108 Polygalacturonase OS Gossypium barbadense GN G9 PE 2 SV 1
blastp_uniprot_sprot sp|P24548|PGLR_OENOR 43 395 + 353 Gaps:3 97.79 362 46.05 6e-106 Exopolygalacturonase (Fragment) OS Oenothera organensis PE 2 SV 1
blastp_uniprot_sprot sp|P35339|PGLR3_MAIZE 29 388 + 360 Gaps:2 88.29 410 42.27 2e-101 Exopolygalacturonase OS Zea mays GN PG2C PE 2 SV 1
blastp_uniprot_sprot sp|P49063|PGLR2_ARATH 64 395 + 332 Gaps:2 75.23 444 45.51 5e-99 Exopolygalacturonase clone GBGA483 OS Arabidopsis thaliana GN At3g07850 PE 2 SV 2
blastp_uniprot_sprot sp|P49062|PGLR1_ARATH 28 389 + 362 Gaps:16 86.26 422 43.96 5e-99 Exopolygalacturonase clone GBGE184 OS Arabidopsis thaliana GN PGA3 PE 2 SV 1
blastp_uniprot_sprot sp|P26216|PGLR1_MAIZE 29 388 + 360 Gaps:2 88.29 410 41.44 1e-98 Exopolygalacturonase OS Zea mays GN PG1 PE 1 SV 1

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 26 396 371 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 6 17 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Gene3D 26 395 370 G3DSA:2.160.20.10 none none IPR012334
Pfam 56 383 328 PF00295 none Glycosyl hydrolases family 28 IPR000743
PANTHER 1 396 396 PTHR31375 none none none
SMART 290 311 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 356 378 23 SM00710 none Parallel beta-helix repeats IPR006626
SMART 180 206 27 SM00710 none Parallel beta-helix repeats IPR006626
SMART 230 250 21 SM00710 none Parallel beta-helix repeats IPR006626
SMART 207 228 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 260 281 22 SM00710 none Parallel beta-helix repeats IPR006626
Phobius 1 5 5 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 1 25 25 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 18 25 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
SUPERFAMILY 13 395 383 SSF51126 none none IPR011050
ProSitePatterns 237 250 14 PS00502 none Polygalacturonase active site. IPR000743
PANTHER 1 396 396 PTHR31375:SF2 none none none

2 Localization

Analysis Start End Length
SignalP_EUK 1 25 24
TMHMM 7 24 17

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting