Protein : Qrob_P0383440.2 Q. robur
Protein Identifier  ? Qrob_P0383440.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K10863 - aprataxin [EC:3.-.-.-] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 765  
Kegg Orthology  K10863
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0033699 DNA 5'-adenosine monophosphate hydrolase activity Catalysis of the reaction: 5'-AMP-DNA + H2O = AMP + DNA; nucleophilic release of a covalently linked adenylate residue from a DNA strand, leaving a 5' phosphate terminus.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103341550 1 763 + 763 Gaps:7 94.97 796 74.34 0.0 transcription factor bHLH140
blastp_kegg lcl|mdm:103425917 1 764 + 764 Gaps:12 100.00 756 74.21 0.0 transcription factor bHLH140-like
blastp_kegg lcl|cit:102619121 1 760 + 760 Gaps:1 99.61 762 71.67 0.0 transcription factor bHLH140-like
blastp_kegg lcl|pxb:103965126 1 764 + 764 Gaps:17 100.00 751 74.03 0.0 transcription factor bHLH140
blastp_kegg lcl|vvi:100259037 5 764 + 760 Gaps:26 100.00 734 75.20 0.0 transcription factor bHLH140-like
blastp_kegg lcl|fve:101306149 1 764 + 764 Gaps:11 100.00 757 70.81 0.0 transcription factor bHLH140-like
blastp_kegg lcl|pper:PRUPE_ppa016188mg 26 763 + 738 Gaps:41 99.86 698 75.47 0.0 hypothetical protein
blastp_kegg lcl|gmx:100786762 1 757 + 757 Gaps:11 98.95 762 70.29 0.0 transcription factor bHLH140-like
blastp_kegg lcl|pop:POPTR_0016s12770g 1 757 + 757 Gaps:40 98.64 735 72.69 0.0 POPTRDRAFT_905274 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_010G073200g 3 757 + 755 Gaps:12 98.56 764 69.59 0.0 hypothetical protein
blastp_pdb 3spl_D 573 736 + 164 Gaps:22 85.29 204 29.31 1e-13 mol:protein length:204 Aprataxin-like protein
blastp_pdb 3spl_C 573 736 + 164 Gaps:22 85.29 204 29.31 1e-13 mol:protein length:204 Aprataxin-like protein
blastp_pdb 3spl_B 573 736 + 164 Gaps:22 85.29 204 29.31 1e-13 mol:protein length:204 Aprataxin-like protein
blastp_pdb 3spl_A 573 736 + 164 Gaps:22 85.29 204 29.31 1e-13 mol:protein length:204 Aprataxin-like protein
blastp_pdb 3spd_D 573 736 + 164 Gaps:22 85.29 204 29.31 1e-13 mol:protein length:204 Aprataxin-like protein
blastp_pdb 3spd_C 573 736 + 164 Gaps:22 85.29 204 29.31 1e-13 mol:protein length:204 Aprataxin-like protein
blastp_pdb 3spd_B 573 736 + 164 Gaps:22 85.29 204 29.31 1e-13 mol:protein length:204 Aprataxin-like protein
blastp_pdb 3spd_A 573 736 + 164 Gaps:22 85.29 204 29.31 1e-13 mol:protein length:204 Aprataxin-like protein
blastp_pdb 3szq_A 573 736 + 164 Gaps:22 84.47 206 29.31 2e-13 mol:protein length:206 Aprataxin-like protein
blastp_pdb 3sp4_B 573 736 + 164 Gaps:22 85.29 204 29.31 2e-13 mol:protein length:204 Aprataxin-like protein
blastp_uniprot_sprot sp|Q9M041|BH140_ARATH 1 754 + 754 Gaps:61 77.30 912 65.11 0.0 Transcription factor bHLH140 OS Arabidopsis thaliana GN BHLH140 PE 4 SV 1
blastp_uniprot_sprot sp|Q7TQC5|APTX_MOUSE 495 736 + 242 Gaps:16 68.42 342 43.16 2e-44 Aprataxin OS Mus musculus GN Aptx PE 1 SV 2
blastp_uniprot_sprot sp|Q7Z2E3|APTX_HUMAN 560 736 + 177 Gaps:13 48.31 356 53.49 9e-44 Aprataxin OS Homo sapiens GN APTX PE 1 SV 2
blastp_uniprot_sprot sp|Q9BGQ0|APTX_MACFA 560 736 + 177 Gaps:13 48.31 356 53.49 1e-43 Aprataxin OS Macaca fascicularis GN APTX PE 2 SV 1
blastp_uniprot_sprot sp|Q7YRZ1|APTX_PIG 562 736 + 175 Gaps:13 47.75 356 53.53 1e-43 Aprataxin OS Sus scrofa GN APTX PE 2 SV 1
blastp_uniprot_sprot sp|Q7YRZ2|APTX_BOVIN 552 736 + 185 Gaps:14 50.84 356 51.38 3e-43 Aprataxin OS Bos taurus GN APTX PE 2 SV 1
blastp_uniprot_sprot sp|Q8K4H4|APTX_RAT 495 736 + 242 Gaps:20 69.30 329 44.30 4e-43 Aprataxin OS Rattus norvegicus GN Aptx PE 2 SV 1
blastp_uniprot_sprot sp|P61797|APTX_CANFA 560 736 + 177 Gaps:13 50.29 342 52.91 7e-43 Aprataxin OS Canis familiaris GN APTX PE 2 SV 1
blastp_uniprot_sprot sp|P61798|APTX_CHICK 560 736 + 177 Gaps:17 54.43 316 52.33 2e-42 Aprataxin (Fragment) OS Gallus gallus GN APTX PE 2 SV 1
blastp_uniprot_sprot sp|P61801|APTX_XENTR 549 736 + 188 Gaps:11 52.74 347 46.45 5e-39 Aprataxin OS Xenopus tropicalis GN aptx PE 2 SV 1

21 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 567 679 113 PF11969 none Scavenger mRNA decapping enzyme C-term binding none
Pfam 367 441 75 PF01661 none Macro domain IPR002589
Pfam 22 151 130 PF13671 none AAA domain none
SUPERFAMILY 555 723 169 SSF54197 none none IPR011146
PANTHER 437 759 323 PTHR12486:SF4 none none IPR026963
PANTHER 21 78 58 PTHR12486:SF4 none none IPR026963
ProSiteProfiles 332 523 192 PS51154 none Macro domain profile. IPR002589
Gene3D 452 470 19 G3DSA:3.40.50.300 none none IPR027417
Gene3D 19 35 17 G3DSA:3.40.50.300 none none IPR027417
Gene3D 567 672 106 G3DSA:3.30.428.10 none none IPR011146
SUPERFAMILY 18 165 148 SSF52540 none none IPR027417
Gene3D 270 318 49 G3DSA:3.40.220.10 none none none
Gene3D 344 451 108 G3DSA:3.40.220.10 none none none
SUPERFAMILY 329 465 137 SSF52949 none none none
ProSitePatterns 648 666 19 PS00892 none HIT domain signature. IPR019808
SUPERFAMILY 266 317 52 SSF52949 none none none
SMART 344 484 141 SM00506 none Appr-1"-p processing enzyme IPR002589
Gene3D 36 156 121 G3DSA:3.40.50.300 none none IPR027417
PANTHER 437 759 323 PTHR12486 none none IPR001310
PANTHER 21 78 58 PTHR12486 none none IPR001310
ProSiteProfiles 566 674 109 PS51084 none HIT domain profile. IPR011146

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting