Protein : Qrob_P0379910.2 Q. robur
Protein Identifier  ? Qrob_P0379910.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) PTHR10217:SF479 - CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED (PTHR10217:SF479) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 689  
Kegg Orthology  K05391
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0005216 ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
GO:0006811 ion transport The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_012032 10 686 + 677 Gaps:13 98.85 694 73.03 0.0 Cyclic nucleotide-gated channel 16
blastp_kegg lcl|pop:POPTR_0017s10130g 11 688 + 678 Gaps:16 98.84 688 72.94 0.0 cyclic nucleotide-gated ion channel 16 family protein
blastp_kegg lcl|rcu:RCOM_1511340 1 687 + 687 Gaps:12 99.85 680 72.75 0.0 Cyclic nucleotide-gated ion channel putative
blastp_kegg lcl|cmo:103493918 19 688 + 670 Gaps:15 98.14 698 73.14 0.0 probable cyclic nucleotide-gated ion channel 16
blastp_kegg lcl|csv:101231791 19 688 + 670 Gaps:16 98.09 679 74.77 0.0 probable cyclic nucleotide-gated ion channel 16-like
blastp_kegg lcl|csv:101209760 19 688 + 670 Gaps:19 98.15 702 72.86 0.0 probable cyclic nucleotide-gated ion channel 16-like
blastp_kegg lcl|pmum:103338325 1 684 + 684 Gaps:18 99.72 704 68.52 0.0 probable cyclic nucleotide-gated ion channel 16
blastp_kegg lcl|pper:PRUPE_ppa016962mg 1 684 + 684 Gaps:18 99.72 704 68.38 0.0 hypothetical protein
blastp_kegg lcl|mdm:103431163 1 684 + 684 Gaps:19 100.00 703 67.85 0.0 probable cyclic nucleotide-gated ion channel 16
blastp_kegg lcl|mdm:103455239 1 684 + 684 Gaps:19 100.00 703 67.71 0.0 probable cyclic nucleotide-gated ion channel 16
blastp_pdb 1wgp_A 437 559 + 123 none 89.78 137 74.80 3e-57 mol:protein length:137 Probable cyclic nucleotide-gated ion channel
blastp_pdb 2ptm_A 372 571 + 200 Gaps:15 93.43 198 25.95 3e-11 mol:protein length:198 Hyperpolarization-activated (Ih) channel
blastp_pdb 3ukv_D 364 541 + 178 Gaps:13 83.49 212 24.86 2e-09 mol:protein length:212 Novel protein similar to vertebrate potassium
blastp_pdb 3ukv_C 364 541 + 178 Gaps:13 83.49 212 24.86 2e-09 mol:protein length:212 Novel protein similar to vertebrate potassium
blastp_pdb 3ukv_A 364 541 + 178 Gaps:13 83.49 212 24.86 2e-09 mol:protein length:212 Novel protein similar to vertebrate potassium
blastp_pdb 3ukv_B 364 541 + 178 Gaps:13 83.49 212 24.86 2e-09 mol:protein length:212 Novel protein similar to vertebrate potassium
blastp_pdb 3ukt_D 364 541 + 178 Gaps:13 83.49 212 24.86 2e-09 mol:protein length:212 Novel protein similar to vertebrate potassium
blastp_pdb 3ukt_C 364 541 + 178 Gaps:13 83.49 212 24.86 2e-09 mol:protein length:212 Novel protein similar to vertebrate potassium
blastp_pdb 3ukt_A 364 541 + 178 Gaps:13 83.49 212 24.86 2e-09 mol:protein length:212 Novel protein similar to vertebrate potassium
blastp_pdb 3ukt_B 364 541 + 178 Gaps:13 83.49 212 24.86 2e-09 mol:protein length:212 Novel protein similar to vertebrate potassium
blastp_uniprot_sprot sp|Q9SU64|CNG16_ARATH 10 681 + 672 Gaps:25 98.87 705 67.86 0.0 Probable cyclic nucleotide-gated ion channel 16 OS Arabidopsis thaliana GN CNGC16 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LEQ3|CNG18_ARATH 27 687 + 661 Gaps:19 95.18 706 68.01 0.0 Putative cyclic nucleotide-gated ion channel 18 OS Arabidopsis thaliana GN CNGC18 PE 3 SV 1
blastp_uniprot_sprot sp|Q8L7Z0|CNG17_ARATH 29 687 + 659 Gaps:15 90.83 720 62.69 0.0 Probable cyclic nucleotide-gated ion channel 17 OS Arabidopsis thaliana GN CNGC17 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SJA4|CNG14_ARATH 17 684 + 668 Gaps:27 91.60 726 60.60 0.0 Probable cyclic nucleotide-gated ion channel 14 OS Arabidopsis thaliana GN CNGC14 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SL29|CNG15_ARATH 32 609 + 578 Gaps:7 84.22 678 59.72 0.0 Putative cyclic nucleotide-gated ion channel 15 OS Arabidopsis thaliana GN CNGC15 PE 3 SV 1
blastp_uniprot_sprot sp|O65717|CNGC1_ARATH 15 684 + 670 Gaps:40 91.34 716 54.89 0.0 Cyclic nucleotide-gated ion channel 1 OS Arabidopsis thaliana GN CNGC1 PE 1 SV 1
blastp_uniprot_sprot sp|O82226|CNGC6_ARATH 17 684 + 668 Gaps:44 87.55 747 53.67 0.0 Probable cyclic nucleotide-gated ion channel 6 OS Arabidopsis thaliana GN CNGC6 PE 1 SV 2
blastp_uniprot_sprot sp|Q9M0A4|CNGC9_ARATH 17 684 + 668 Gaps:45 87.18 733 54.15 0.0 Putative cyclic nucleotide-gated ion channel 9 OS Arabidopsis thaliana GN CNGC9 PE 1 SV 1
blastp_uniprot_sprot sp|Q8RWS9|CNGC5_ARATH 17 684 + 668 Gaps:41 89.40 717 53.51 0.0 Probable cyclic nucleotide-gated ion channel 5 OS Arabidopsis thaliana GN CNGC5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9S9N5|CNGC7_ARATH 17 684 + 668 Gaps:22 89.43 738 52.58 0.0 Putative cyclic nucleotide-gated ion channel 7 OS Arabidopsis thaliana GN CNGC7 PE 3 SV 1

28 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 208 228 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 297 607 311 PTHR10217:SF479 none none none
PANTHER 32 237 206 PTHR10217:SF479 none none none
ProSiteProfiles 442 572 131 PS50042 none cAMP/cGMP binding motif profile. IPR000595
Phobius 358 688 331 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 229 337 109 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 338 357 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 87 359 273 PF00520 none Ion transport protein IPR005821
SMART 442 573 132 SM00100 none Cyclic nucleotide-monophosphate binding domain IPR000595
Phobius 1 45 45 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 69 79 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 102 135 34 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 465 557 93 PF00027 none Cyclic nucleotide-binding domain IPR000595
SUPERFAMILY 304 364 61 SSF81324 none none none
SUPERFAMILY 38 233 196 SSF81324 none none none
Phobius 159 169 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 170 188 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 136 158 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 46 68 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 43 232 190 G3DSA:1.10.287.70 none none none
Gene3D 304 366 63 G3DSA:1.10.287.70 none none none
SUPERFAMILY 371 567 197 SSF51206 none none IPR018490
Phobius 189 207 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 80 101 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 297 607 311 PTHR10217 none none none
PANTHER 32 237 206 PTHR10217 none none none
Gene3D 367 433 67 G3DSA:1.10.287.630 none none none
Gene3D 440 558 119 G3DSA:2.60.120.10 none none IPR014710

6 Localization

Analysis Start End Length
TMHMM 334 356 22
TMHMM 44 66 22
TMHMM 79 101 22
TMHMM 136 158 22
TMHMM 171 193 22
TMHMM 208 230 22

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting