Protein : Qrob_P0379720.2 Q. robur
Protein Identifier  ? Qrob_P0379720.2 Organism . Name  Quercus robur
Protein Description  (M=6) PTHR11730:SF6 - AMMONIUM TRANSPORTER Alias (in v1)  Qrob_P0008300.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 500  
Kegg Orthology  K03320
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0008519 ammonium transmembrane transporter activity Enables the transfer of ammonium from one side of a membrane to the other. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.
GO:0015696 ammonium transport The directed movement of ammonium into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.
GO:0072488 ammonium transmembrane transport The directed movement of ammonium across a membrane by means of some agent such as a transporter or pore. Ammonium is the cation NH4+.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1024140 1 499 + 499 none 99.40 502 84.97 0.0 ammonium transporter putative
blastp_kegg lcl|vvi:100258016 1 495 + 495 Gaps:6 98.61 502 86.46 0.0 ammonium transporter 1 member 1-like
blastp_kegg lcl|pper:PRUPE_ppa004542mg 2 498 + 497 Gaps:8 99.01 504 85.77 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10004812mg 3 498 + 496 Gaps:4 99.20 500 84.48 0.0 hypothetical protein
blastp_kegg lcl|pmum:103323778 2 493 + 492 Gaps:9 97.81 502 85.54 0.0 ammonium transporter 1 member 1-like
blastp_kegg lcl|pop:POPTR_0010s07400g 1 499 + 499 Gaps:5 99.80 501 83.80 0.0 POPTRDRAFT_804848 ammonium transporter family protein
blastp_kegg lcl|pvu:PHAVU_007G231700g 1 499 + 499 Gaps:4 99.80 500 82.97 0.0 hypothetical protein
blastp_kegg lcl|mdm:103453520 2 499 + 498 Gaps:8 99.01 505 83.60 0.0 ammonium transporter 1 member 1
blastp_kegg lcl|pxb:103933639 2 499 + 498 Gaps:6 99.01 505 83.60 0.0 ammonium transporter 1 member 1-like
blastp_kegg lcl|mdm:103430872 2 499 + 498 Gaps:8 99.01 505 83.60 0.0 ammonium transporter 1 member 1-like
blastp_pdb 2ns1_A 35 471 + 437 Gaps:53 97.57 412 31.59 4e-38 mol:protein length:412 Ammonia channel
blastp_pdb 1xqf_A 35 471 + 437 Gaps:53 96.17 418 31.59 5e-38 mol:protein length:418 Probable ammonium transporter
blastp_pdb 1xqe_A 35 471 + 437 Gaps:53 96.17 418 31.59 5e-38 mol:protein length:418 Probable ammonium transporter
blastp_pdb 3c1g_A 35 471 + 437 Gaps:53 94.81 424 31.59 5e-38 mol:protein length:424 Ammonia channel
blastp_pdb 2nop_A 35 471 + 437 Gaps:53 94.81 424 31.59 5e-38 mol:protein length:424 Ammonia channel
blastp_pdb 2nmr_A 35 471 + 437 Gaps:53 94.81 424 31.59 5e-38 mol:protein length:424 Ammonia channel
blastp_pdb 2nuu_F 48 471 + 424 Gaps:46 95.42 415 31.06 9e-38 mol:protein length:415 Ammonia channel
blastp_pdb 2nuu_E 48 471 + 424 Gaps:46 95.42 415 31.06 9e-38 mol:protein length:415 Ammonia channel
blastp_pdb 2nuu_D 48 471 + 424 Gaps:46 95.42 415 31.06 9e-38 mol:protein length:415 Ammonia channel
blastp_pdb 2nuu_C 48 471 + 424 Gaps:46 95.42 415 31.06 9e-38 mol:protein length:415 Ammonia channel
blastp_uniprot_sprot sp|P58905|AMT11_SOLLC 4 495 + 492 Gaps:8 100.00 488 84.02 0.0 Ammonium transporter 1 member 1 OS Solanum lycopersicum GN AMT1-1 PE 2 SV 1
blastp_uniprot_sprot sp|P54144|AMT11_ARATH 4 497 + 494 Gaps:8 98.20 501 81.91 0.0 Ammonium transporter 1 member 1 OS Arabidopsis thaliana GN AMT1-1 PE 1 SV 1
blastp_uniprot_sprot sp|O04161|AMT12_SOLLC 2 499 + 498 Gaps:8 98.05 514 76.98 0.0 Ammonium transporter 1 member 2 OS Solanum lycopersicum GN AMT1-2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SQH9|AMT13_ARATH 3 498 + 496 Gaps:13 98.19 498 77.30 0.0 Ammonium transporter 1 member 3 OS Arabidopsis thaliana GN AMT1-3 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LK16|AMT15_ARATH 3 478 + 476 Gaps:6 95.56 496 77.85 0.0 Putative ammonium transporter 1 member 5 OS Arabidopsis thaliana GN AMT1-5 PE 3 SV 1
blastp_uniprot_sprot sp|Q7XQ12|AMT11_ORYSJ 4 491 + 488 Gaps:18 97.59 498 77.98 0.0 Ammonium transporter 1 member 1 OS Oryza sativa subsp. japonica GN AMT1-1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6K9G1|AMT12_ORYSJ 9 482 + 474 Gaps:10 94.76 496 80.00 0.0 Ammonium transporter 1 member 2 OS Oryza sativa subsp. japonica GN AMT1-2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZPJ8|AMT12_ARATH 27 493 + 467 Gaps:6 92.02 514 77.80 0.0 Ammonium transporter 1 member 2 OS Arabidopsis thaliana GN AMT1-2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SVT8|AMT14_ARATH 2 492 + 491 Gaps:12 99.01 504 75.75 0.0 Ammonium transporter 1 member 4 OS Arabidopsis thaliana GN AMT1-4 PE 1 SV 1
blastp_uniprot_sprot sp|Q6K9G3|AMT13_ORYSJ 21 492 + 472 Gaps:12 94.38 498 75.32 0.0 Ammonium transporter 1 member 3 OS Oryza sativa subsp. japonica GN AMT1-3 PE 2 SV 1

26 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 3 478 476 PTHR11730:SF6 none none none
Phobius 201 224 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 75 94 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 264 342 79 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
TIGRFAM 48 471 424 TIGR00836 none amt: ammonium transporter IPR001905
Phobius 159 181 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 50 50 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 153 158 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 44 452 409 G3DSA:1.10.3430.10 none none IPR029020
Phobius 375 398 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 182 200 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 418 444 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 445 499 55 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 364 374 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 115 133 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSitePatterns 203 228 26 PS01219 none Ammonium transporters signature. IPR018047
Phobius 225 244 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 343 363 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 3 478 476 PTHR11730 none none IPR001905
Phobius 95 114 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 51 471 421 PF00909 none Ammonium Transporter Family IPR024041
Phobius 51 74 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 134 152 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 46 452 407 SSF111352 none none IPR024041
Phobius 245 263 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 399 417 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

9 Localization

Analysis Start End Length
TMHMM 134 153 19
TMHMM 49 71 22
TMHMM 422 444 22
TMHMM 245 267 22
TMHMM 160 182 22
TMHMM 287 309 22
TMHMM 92 114 22
TMHMM 322 344 22
TMHMM 202 224 22

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting