Protein : Qrob_P0357230.2 Q. robur
Protein Identifier  ? Qrob_P0357230.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PF08670 - MEKHLA domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 839  
Kegg Orthology  K09338
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0008289 lipid binding Interacting selectively and non-covalently with a lipid.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_028866 1 838 + 838 none 100.00 838 96.06 0.0 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 1
blastp_kegg lcl|rcu:RCOM_1491170 1 838 + 838 Gaps:1 100.00 839 95.23 0.0 DNA binding protein putative
blastp_kegg lcl|vvi:100260057 1 838 + 838 Gaps:1 100.00 837 95.34 0.0 homeobox-leucine zipper protein ATHB-15-like
blastp_kegg lcl|pmum:103327848 1 838 + 838 Gaps:1 100.00 837 94.98 0.0 homeobox-leucine zipper protein ATHB-15
blastp_kegg lcl|pper:PRUPE_ppa001405mg 1 838 + 838 Gaps:1 100.00 837 94.86 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10024891mg 1 838 + 838 none 100.00 838 93.08 0.0 hypothetical protein
blastp_kegg lcl|cit:102606682 1 838 + 838 none 100.00 838 93.08 0.0 homeobox-leucine zipper protein ATHB-15-like
blastp_kegg lcl|pxb:103944827 1 838 + 838 none 100.00 838 94.15 0.0 homeobox-leucine zipper protein ATHB-15
blastp_kegg lcl|mdm:103443829 1 838 + 838 none 100.00 838 94.15 0.0 homeobox-leucine zipper protein ATHB-15
blastp_kegg lcl|csv:101231303 1 838 + 838 Gaps:1 100.00 837 93.91 0.0 homeobox-leucine zipper protein ATHB-15-like
blastp_pdb 1bw5_A 24 76 + 53 Gaps:4 74.24 66 36.73 3e-06 mol:protein length:66 INSULIN GENE ENHANCER PROTEIN ISL-1
blastp_uniprot_sprot sp|Q9ZU11|ATB15_ARATH 1 838 + 838 Gaps:6 100.00 836 89.23 0.0 Homeobox-leucine zipper protein ATHB-15 OS Arabidopsis thaliana GN ATHB-15 PE 1 SV 1
blastp_uniprot_sprot sp|Q39123|ATHB8_ARATH 13 838 + 826 Gaps:15 98.80 833 80.32 0.0 Homeobox-leucine zipper protein ATHB-8 OS Arabidopsis thaliana GN ATHB-8 PE 1 SV 1
blastp_uniprot_sprot sp|Q6AST1|HOX32_ORYSJ 8 838 + 831 Gaps:6 97.44 859 70.49 0.0 Homeobox-leucine zipper protein HOX32 OS Oryza sativa subsp. japonica GN HOX32 PE 2 SV 1
blastp_uniprot_sprot sp|A2XK30|HOX32_ORYSI 8 838 + 831 Gaps:6 97.44 859 70.49 0.0 Homeobox-leucine zipper protein HOX32 OS Oryza sativa subsp. indica GN HOX32 PE 2 SV 1
blastp_uniprot_sprot sp|Q2QM96|HOX33_ORYSJ 13 838 + 826 Gaps:7 97.19 855 68.59 0.0 Homeobox-leucine zipper protein HOX33 OS Oryza sativa subsp. japonica GN HOX33 PE 2 SV 1
blastp_uniprot_sprot sp|A2ZMN9|HOX33_ORYSI 13 838 + 826 Gaps:7 97.19 855 68.59 0.0 Homeobox-leucine zipper protein HOX33 OS Oryza sativa subsp. indica GN HOX33 PE 2 SV 2
blastp_uniprot_sprot sp|A2WLR5|HOX29_ORYSI 13 838 + 826 Gaps:43 100.00 861 67.94 0.0 Homeobox-leucine zipper protein HOX29 OS Oryza sativa subsp. indica GN HOX29 PE 2 SV 2
blastp_uniprot_sprot sp|Q5QMZ9|HOX29_ORYSJ 11 838 + 828 Gaps:43 99.42 868 67.67 0.0 Homeobox-leucine zipper protein HOX29 OS Oryza sativa subsp. japonica GN HOX29 PE 2 SV 2
blastp_uniprot_sprot sp|A2XBL9|HOX10_ORYSI 1 838 + 838 Gaps:17 99.28 839 66.51 0.0 Homeobox-leucine zipper protein HOX10 OS Oryza sativa subsp. indica GN HOX10 PE 2 SV 2
blastp_uniprot_sprot sp|Q6TAQ6|HOX10_ORYSJ 1 838 + 838 Gaps:17 99.28 839 66.39 0.0 Homeobox-leucine zipper protein HOX10 OS Oryza sativa subsp. japonica GN HOX10 PE 2 SV 1
rpsblast_cdd gnl|CDD|149655 691 838 + 148 none 100.00 148 57.43 8e-71 pfam08670 MEKHLA MEKHLA domain. The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes and bacterial proteins.
rpsblast_cdd gnl|CDD|176884 155 371 + 217 Gaps:22 100.00 229 35.37 5e-68 cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
rpsblast_cdd gnl|CDD|202011 160 370 + 211 Gaps:14 100.00 205 37.56 3e-46 pfam01852 START START domain.
rpsblast_cdd gnl|CDD|197591 161 369 + 209 Gaps:13 99.51 205 29.41 8e-32 smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein.
rpsblast_cdd gnl|CDD|176851 198 345 + 148 Gaps:12 73.58 193 25.35 6e-14 cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15 and related domains such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family specific lipids that bind in this pocket are known these include cholesterol (STARD1/STARD3/ STARD4/STARD5) 25-hydroxycholesterol (STARD5) phosphatidylcholine (STARD2/ STARD7/STARD10) phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular processes including lipid trafficking between intracellular compartments lipid metabolism and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer genetic disorders and autoimmune disease. The Arabidopsis homeobox protein GLABRA 2 suppresses root hair formation in hairless epidermal root cells.
rpsblast_cdd gnl|CDD|200956 17 75 + 59 Gaps:4 96.49 57 40.00 1e-13 pfam00046 Homeobox Homeobox domain.
rpsblast_cdd gnl|CDD|197696 17 74 + 58 Gaps:4 94.74 57 42.59 3e-13 smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes.
rpsblast_cdd gnl|CDD|28970 17 77 + 61 Gaps:4 96.61 59 42.11 6e-12 cd00086 homeodomain Homeodomain DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes may bind to DNA as monomers or as homo- and/or heterodimers in a sequence-specific manner..
rpsblast_cdd gnl|CDD|35135 16 112 + 97 Gaps:15 66.67 156 29.81 2e-09 COG5576 COG5576 Homeodomain-containing transcription factor [Transcription].

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 160 371 212 SSF55961 none none none
SMART 160 370 211 SM00234 none in StAR and phosphatidylcholine transfer protein IPR002913
Pfam 17 75 59 PF00046 none Homeobox domain IPR001356
Gene3D 160 366 207 G3DSA:3.30.530.20 none none IPR023393
Gene3D 19 75 57 G3DSA:1.10.10.60 none none IPR009057
PANTHER 1 280 280 PTHR24326:SF121 none none none
Pfam 691 838 148 PF08670 none MEKHLA domain IPR013978
Pfam 161 369 209 PF01852 none START domain IPR002913
ProSiteProfiles 12 76 65 PS50071 none 'Homeobox' domain profile. IPR001356
SUPERFAMILY 17 80 64 SSF46689 none none IPR009057
ProSiteProfiles 151 366 216 PS50848 none START domain profile. IPR002913
Coils 72 114 43 Coil none none none
SMART 14 80 67 SM00389 none Homeodomain IPR001356
PANTHER 1 280 280 PTHR24326 none none none

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting