Protein : Qrob_P0342330.2 Q. robur
Protein Identifier  ? Qrob_P0342330.2 Organism . Name  Quercus robur
Score  84.1 Score Type  egn
Protein Description  (M=2) K15191 - La-related protein 7 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 491  
Kegg Orthology  K15191
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

6 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0030529 ribonucleoprotein complex A macromolecular complex containing both protein and RNA molecules.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100241743 14 482 + 469 Gaps:2 94.17 412 72.16 9e-155 uncharacterized LOC100241743
blastp_kegg lcl|fve:101311941 1 479 + 479 Gaps:11 99.50 401 72.18 7e-150 uncharacterized protein LOC101311941
blastp_kegg lcl|rcu:RCOM_0774180 1 483 + 483 Gaps:39 99.32 440 65.68 1e-142 lupus la ribonucleoprotein putative
blastp_kegg lcl|mdm:103454486 1 477 + 477 Gaps:10 99.01 404 70.25 1e-136 la-related protein 6C
blastp_kegg lcl|pper:PRUPE_ppa024894mg 1 477 + 477 Gaps:9 99.00 401 71.54 8e-133 hypothetical protein
blastp_kegg lcl|pmum:103335409 1 477 + 477 Gaps:9 99.00 401 71.54 9e-133 la-related protein 6C
blastp_kegg lcl|cic:CICLE_v10028506mg 1 473 + 473 Gaps:29 97.41 424 64.89 3e-131 hypothetical protein
blastp_kegg lcl|pda:103717244 24 489 + 466 Gaps:15 93.69 412 61.14 3e-126 la-related protein 6C
blastp_kegg lcl|cit:102615614 1 473 + 473 Gaps:29 97.41 424 64.65 4e-126 la-related protein 7-like
blastp_kegg lcl|pop:POPTR_0004s15210g 1 486 + 486 Gaps:26 100.00 429 60.14 4e-125 hypothetical protein
blastp_pdb 1s29_A 184 258 + 75 none 81.52 92 36.00 9e-09 mol:protein length:92 La protein
blastp_pdb 2vop_A 184 300 + 117 Gaps:8 63.73 193 27.64 4e-06 mol:protein length:193 LUPUS LA PROTEIN
blastp_pdb 2voo_B 184 300 + 117 Gaps:8 63.73 193 27.64 4e-06 mol:protein length:193 LUPUS LA PROTEIN
blastp_pdb 2voo_A 184 300 + 117 Gaps:8 63.73 193 27.64 4e-06 mol:protein length:193 LUPUS LA PROTEIN
blastp_pdb 2von_B 184 300 + 117 Gaps:8 63.73 193 27.64 4e-06 mol:protein length:193 LUPUS LA PROTEIN
blastp_pdb 2von_A 184 300 + 117 Gaps:8 63.73 193 27.64 4e-06 mol:protein length:193 LUPUS LA PROTEIN
blastp_pdb 2vod_B 184 300 + 117 Gaps:8 63.73 193 27.64 4e-06 mol:protein length:193 LUPUS LA PROTEIN
blastp_pdb 2vod_A 184 300 + 117 Gaps:8 63.73 193 27.64 4e-06 mol:protein length:193 LUPUS LA PROTEIN
blastp_pdb 1yty_B 184 300 + 117 Gaps:8 63.40 194 27.64 5e-06 mol:protein length:194 Lupus La protein
blastp_pdb 1yty_A 184 300 + 117 Gaps:8 63.40 194 27.64 5e-06 mol:protein length:194 Lupus La protein
blastp_uniprot_sprot sp|Q5XI01|LARP7_RAT 184 342 + 159 Gaps:11 25.92 571 37.16 4e-19 La-related protein 7 OS Rattus norvegicus GN Larp7 PE 1 SV 2
blastp_uniprot_sprot sp|Q05CL8|LARP7_MOUSE 184 342 + 159 Gaps:11 25.96 570 37.16 4e-19 La-related protein 7 OS Mus musculus GN Larp7 PE 1 SV 2
blastp_uniprot_sprot sp|Q4R627|LARP7_MACFA 184 342 + 159 Gaps:11 25.47 581 37.84 6e-19 La-related protein 7 OS Macaca fascicularis GN LARP7 PE 2 SV 1
blastp_uniprot_sprot sp|Q4G0J3|LARP7_HUMAN 184 342 + 159 Gaps:11 25.43 582 37.84 8e-19 La-related protein 7 OS Homo sapiens GN LARP7 PE 1 SV 1
blastp_uniprot_sprot sp|Q7ZWE3|LARP7_DANRE 184 342 + 159 Gaps:11 26.67 555 36.49 7e-17 La-related protein 7 OS Danio rerio GN larp7 PE 2 SV 1
blastp_uniprot_sprot sp|Q28G87|LARP7_XENTR 184 342 + 159 Gaps:11 24.96 593 33.11 4e-16 La-related protein 7 OS Xenopus tropicalis GN larp7 PE 2 SV 1
blastp_uniprot_sprot sp|Q9BRS8|LARP6_HUMAN 184 355 + 172 Gaps:21 39.31 491 27.46 5e-12 La-related protein 6 OS Homo sapiens GN LARP6 PE 1 SV 1
blastp_uniprot_sprot sp|Q8BN59|LARP6_MOUSE 184 355 + 172 Gaps:21 39.23 492 26.94 1e-11 La-related protein 6 OS Mus musculus GN Larp6 PE 1 SV 1
blastp_uniprot_sprot sp|P33399|LHP1_YEAST 184 300 + 117 Gaps:14 46.18 275 33.07 9e-10 La protein homolog OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN LHP1 PE 1 SV 2
blastp_uniprot_sprot sp|P40796|LA_DROME 184 279 + 96 Gaps:7 26.41 390 35.92 4e-06 La protein homolog OS Drosophila melanogaster GN La PE 1 SV 2

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 184 255 72 SM00715 none Domain in the RNA-binding Lupus La protein IPR006630
Gene3D 263 353 91 G3DSA:3.30.70.330 none none IPR012677
Pfam 184 240 57 PF05383 none La domain IPR006630
ProSiteProfiles 171 262 92 PS50961 none La-type HTH domain profile. IPR006630
Pfam 274 342 69 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
PANTHER 184 473 290 PTHR22792:SF52 none none none
PRINTS 184 201 18 PR00302 none Lupus La protein signature IPR002344
PRINTS 263 279 17 PR00302 none Lupus La protein signature IPR002344
PRINTS 319 337 19 PR00302 none Lupus La protein signature IPR002344
PRINTS 210 225 16 PR00302 none Lupus La protein signature IPR002344
PRINTS 241 254 14 PR00302 none Lupus La protein signature IPR002344
SMART 270 353 84 SM00360 none RNA recognition motif IPR000504
SUPERFAMILY 257 362 106 SSF54928 none none none
PANTHER 184 473 290 PTHR22792 none none none
ProSiteProfiles 269 359 91 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
Gene3D 184 258 75 G3DSA:1.10.10.10 none none IPR011991
SUPERFAMILY 184 258 75 SSF46785 none none none

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting